bio-raum / FooDMe2

A nextflow pipeline for the identification of species from mixed samples based on mitochondrial amplicons
https://bio-raum.github.io/FooDMe2/
GNU General Public License v3.0
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Add support for UNITE database #4

Closed marchoeppner closed 4 months ago

marchoeppner commented 4 months ago

To keep with the theme of "slim" reference databases as the "default", we would have to add the UNITE database for ITS analyses.

https://unite.ut.ee/

FASTA files are provided, but we will have to generate the tax id maps for Blast, probably be doing a lookup in the NCBI taxonomy dump.