bio-raum / FooDMe2

A nextflow pipeline for the identification of species from mixed samples based on mitochondrial amplicons
https://bio-raum.github.io/FooDMe2/
GNU General Public License v3.0
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💡 [REQUEST] - MultiQC 'General Statistics' is useless #68

Open gregdenay opened 1 week ago

gregdenay commented 1 week ago

Is your feature request related to a problem?

The information contained in the General statistics table is quite useless to evaluate the quality of the results.

Describe the solution you'd like

Following fields should be present:

possibly more, I am open to suggestions. It is probably better to keep it short and to the point though.

Description

Alternatives are extracting the info from the graphs or digging in the output files.

Additional context

No response

marchoeppner commented 1 week ago

Fair enough!

Most of that comes from FastQC; we can add it as a module after trimming.

The % assigned is probably "custom"; need to look into how to get custom data in the "general statistics" section.