Bio2BEL Complex Portal

Download data from ftp://ftp.ebi.ac.uk/pub/databases/intact/complex/current/complextab/homo_sapiens.tsv

The first line contains the header of:

• Complex ac
• Recommended name
• Aliases for complex
• Taxonomy identifier
• Identifiers (and stoichiometry) of molecules in complex
• Confidence
• Experimental evidence
• Go Annotations
• Cross references
• Description
• Complex properties
• Complex assembly
• Ligand
• Disease
• Agonist
• Antagonist
• Comment
• Source

Goal 1: Generate BEL namespace file using bel_resources.write_namespace <https://github.com/cthoyt/bel-resources/blob/master/src/bel_resources/write_namespace.py>_.

Arguments to this function:

• values should be a dictionary from keys as entries from Complex ac and the values as 'C', which represents complexes in BEL namespace files
• namespace_name should be 'Complex Portal'
• namespace_keyword should be 'complexportal'.

Goal 2: Create an instance of pybel.BELGraph <https://pybel.readthedocs.io/en/latest/datamodel.html#pybel.BELGraph>_ and populate it with links from complexes to their constituent entities (in Identifiers (and stoichiometry) of molecules in complex) using pybel.BELGraph.add_part_of <https://pybel.readthedocs.io/en/latest/datamodel.html#pybel.BELGraph.add_part_of>_.