biocommons eutils issues

biocommons / eutils

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

Apache License 2.0

58 stars 25 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

docs: fix examples

#182 jsstevenson closed 4 months ago
0
chore: add ignore revs file

#181 jsstevenson closed 4 months ago
0
style: format with Ruff

#180 jsstevenson closed 4 months ago
0
chore: fix license classifier

#179 jsstevenson closed 5 months ago
0
Add Biocommons CICD actions

#178 jsstevenson opened 6 months ago
2
Fix failing tests

#177 jsstevenson opened 6 months ago
0
build!: configure with pyproject.toml using biocommons.example parameters

#176 jsstevenson closed 6 months ago
0
"Examples" in docs are broken

#175 jsstevenson closed 4 months ago
0
Implement client interface for `elink`

#174 jsstevenson opened 7 months ago
1
ModuleNotFoundError (pkg_resources) on import in fresh 3.12 environment

#173 jsstevenson closed 6 months ago
1
Expose SQLiteCache

#172 bpeterman closed 1 year ago
4
.efetch() fails silently when batch query exceeds 250 IDs

#171 safay closed 10 months ago
2
installing from tarball failed

#170 shouldsee closed 4 years ago
1
Update queryservice.py docstrings

#169 shouldsee closed 4 years ago
0
Update README.rst

#168 shouldsee closed 4 years ago
0
Address issues found by Deepsource

#167 reece closed 10 months ago
5
Remove python 2.7 support code

#166 reece closed 4 years ago
0
Replace deprecated time.clock function

#165 jvansan closed 4 years ago
1
EutilsRequestError handling raises AttributeError:

#164 jvansan closed 4 years ago
0
Add .deepsource.toml, Fix issues raised by DeepSource

#163 mohi7solanki closed 4 years ago
0
Release last 2.7 version with pinned dependencies

#162 reece closed 5 years ago
0
modernize eutils development practice

#161 reece closed 4 years ago
3
hide internal submodules

#160 reece closed 5 years ago
0
Medcitations qualifiers types

#159 VincentMatthys closed 5 years ago
2
closes #157: edge case results in error being thrown when extracting abstract text

#158 pmartin23 closed 6 years ago
4
Edge case results in error being thrown when extracting abstract text in medlinecitation.py

#157 pmartin23 closed 6 years ago
1
closes #132: Fix functions default argument

#156 ShriramK closed 6 years ago
2
Call name typo

#155 ShriramK closed 6 years ago
0
Fixes #152 - add support for ncbi_api_key

#154 timothyjlaurent closed 6 years ago
0
efetch for protein db

#153 bryan-brancotte closed 6 years ago
1
option to specify API key for QueryService instances

#152 pmartin23 closed 6 years ago
3
Fix for #150

#151 andreasprlic closed 7 years ago
1
Can't efetch gi

#150 andreasprlic closed 7 years ago
1
A bug in the abstract property in medlinecitation.py

#149 jinseonyou closed 7 years ago
1
A bug in abstract property in Medlinecitation.py

#148 jinseonyou closed 7 years ago
0
Client: Don't use cache by default

#147 reece closed 7 years ago
0
use vcrpy to eliminate/reduce remote calls during testing

#146 reece closed 7 years ago
1
update dbSNP for the change to https

#145 cariaso closed 7 years ago
1
Nucest support

#144 diekhans closed 7 years ago
0
include error message from XML parser when can't parse NCBI response

#143 diekhans closed 7 years ago
2
QueryService treats all error responses from NCBI as being encoded as XML

#142 diekhans closed 6 years ago
1
Wrong URL in Warning

#141 LLCampos closed 7 years ago
2
Fails to install with pip on Windows

#140 baoilleach closed 7 years ago
6
Wrap error handling and parsing with try catch - added test

#139 timothyjlaurent closed 8 years ago
0
Key Error with today's NCBI 'testing'

#138 timothyjlaurent closed 8 years ago
1
NCBI switching exclusively to https as of 9/26/2016

#137 nthmost closed 8 years ago
2
Use https for NCBI E-utilities

#136 reece closed 8 years ago
1
basic support for pubmedcentral

#135 cariaso closed 8 years ago
2
Eutils sqlite cache can store NCBI error page

#134 naomifox closed 8 years ago
0
dummy issue

#118 reece closed 8 years ago
0