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bioconda / bioconda-recipes

Conda recipes for the bioconda channel.
https://bioconda.github.io
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Your details for the Bioconda paper author list #6323

Closed johanneskoester closed 6 years ago

johanneskoester commented 6 years ago

Dear @bioconda/all, to create the author list of the Bioconda paper, we need your full name and affiliation (include address). I hope to be able to include everybody who is part of the github team, posts his/her details here, and has at least one commit into the publication, because I don't want to be the person who decides about a threshold (this is no promise, but we'll try). You all deserve it, as you are doing a great job for the community.

The manuscript is here: https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g We currently plan to submit to Nature Methods.

So, please post your details here if you want to be part of the paper. Email addresses are not needed.

PI's who want to be included on the authors list without having personally committed code: please write me (johannes.koester@protonmail.com) an email, outlining your contribution. I will forward it to @bgruening and @daler, we will discuss this and come back to you as soon as possible.

souravsingh commented 6 years ago

@johanneskoester My details- Name- Sourav Singh Affiliation- Savitribai Phule Pune University, Pune, Maharashtra, India

matthdsm commented 6 years ago

Matthias De Smet Ghent University Hospital - Ghent University, Belgium

nsoranzo commented 6 years ago

Nicola Soranzo Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK https://orcid.org/0000-0003-3627-5340

cbrueffer commented 6 years ago

Christian Brueffer Division of Oncology and Pathology, Department of Clinical Sciences, Lund University, Lund, SE (ORCID 0000-0002-3826-0989)

shiltemann commented 6 years ago

Saskia Hiltemann Erasmus Medical Center, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands (orcid ID https://orcid.org/0000-0003-3803-468X)

ar0ch commented 6 years ago

Aroon T. Chande Applied Bioinformatics Laboratory, 2 Ravinia Drive, Suite 1200 Atlanta, GA, 30346 USA

lucapinello commented 6 years ago

Luca Pinello, Massachusetts General Hospital and Harvard Medical School, Boston,US.

On Oct 16, 2017 5:45 AM, "Matthias De Smet" notifications@github.com wrote:

Matthias De Smet Ghent University Hospital - Ghent University, Belgium

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub https://github.com/bioconda/bioconda-recipes/issues/6323#issuecomment-336836067, or mute the thread https://github.com/notifications/unsubscribe-auth/ABB_6qgM4H_oI6DRJbVNwiL3Qm5F5yVvks5ssyXFgaJpZM4P6WWu .

abretaud commented 6 years ago

Anthony Bretaudeau INRA, UMR IGEPP, BioInformatics Platform for Agroecosystems Arthropods (BIPAA), Campus Beaulieu, Rennes, 35042 France

peterjc commented 6 years ago

Peter J. A. Cock The James Hutton Institute, Dundee, DD2 5DA, UK. https://orcid.org/0000-0001-9513-9993

sschmeier commented 6 years ago

Sebastian Schmeier Massey University, Institute of Natural and Mathematical Sciences, Albany Highway, North Shore City, Albany 0632, New Zealand http://orcid.org/0000-0002-3947-8226

pirovc commented 6 years ago

Vitor C. Piro Bioinformatics Unit (MF1), Robert Koch Institute, Nordufer 20, Berlin 13353, Germany if possible please add a second affiliation: CAPES Foundation, Ministry of Education of Brazil, Brasília - DF, 70040-020 Brazil

bebatut commented 6 years ago

Bérénice Batut Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany ORCID: http://orcid.org/0000-0001-9852-1987

brainstorm commented 6 years ago

Roman Valls Guimera Center for Cancer Research, University of Melbourne, Melbourne, Australia

mdehollander commented 6 years ago

Mattias de Hollander Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands https://orcid.org/0000-0002-3553-9482

eseiler commented 6 years ago

Enrico Seiler Bioinformatics Unit (MF1), Robert Koch Institute, Nordufer 20, Berlin 13353, Germany

eggzilla commented 6 years ago

Florian Eggenhofer Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany. https://orcid.org/0000-0001-9564-7525

blankclemens commented 6 years ago

Clemens Blank Bioinformatics Group Department of Computer Science University of Freiburg Georges-Köhler-Allee 106 D-79110 Freiburg Germany

ORCID: https://orcid.org/0000-0002-1726-2256

k3yavi commented 6 years ago

Avi Srivastava Ph.D. Candidate, Department of Computer Science Stony Brook University, Stony Brook, New York, USA, https://orcid.org/0000-0001-9798-2079

rasmusagren commented 6 years ago

Rasmus Agren Department of Biology and Biological Engineering, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Chalmers University of Technology

16 okt. 2017 kl. 12:58 skrev Peter Cock notifications@github.com:

Peter J. A. Cock The James Hutton Institute, Dundee, DD2 5DA, UK. https://orcid.org/0000-0001-9513-9993

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

marcelm commented 6 years ago

Marcel Martin Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University, Box 1031, SE-17121 Solna, Sweden http://orcid.org/0000-0002-0680-200X

tdido commented 6 years ago

Tomás Di Domenico Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SA, UK http://orcid.org/0000-0003-2887-815X

chapmanb commented 6 years ago

Brad A Chapman Harvard T.H. Chan School of Public Health Boston, MA, United States

holtgrewe commented 6 years ago

Manuel Holtgrewe Core Unit Bioinformatics, Berlin Institute of Health, Berlin 10117, Germany Charité Universitätsmedizin Berlin, Berlin 10117, Germany

jeromekelleher commented 6 years ago

Jerome Kelleher Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, OX3 7FZ, UK.

http://orcid.org/0000-0002-7894-5253

dkoppstein commented 6 years ago

Thanks @johanneskoester and the other authors, that's very kind of you to include everyone on the author list.

David Koppstein The Kirby Institute of Infection and Immunity, University of New South Wales, Sydney, Australia ORCID: 0000-0002-8618-7237

I have a few comments on the manuscript which I'll add to the Authorea document separately.

Cheers

martin-raden commented 6 years ago

nice paper giving a good overview about the whole project.. thanks for all your efforts!

Martin Raden Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany. http://orcid.org/0000-0002-7926-5911

dpryan79 commented 6 years ago

Devon Ryan Bioinformatics core facility Max Planck Institute for Immunobiology and Epigenetics Stübeweg 51 D-79108 Freiburg, Germany http://orcid.org/0000-0002-8549-0971

julozi commented 6 years ago

Julien Seiler Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS UMR 7104, Illkirch, 67404 France

Le 16 oct. 2017 à 11:42, Johannes Köster notifications@github.com a écrit :

Dear @bioconda/all https://github.com/orgs/bioconda/teams/all, to create the author list of the Bioconda paper, we need your full name and affiliation. I hope to be able to include everybody who is part of the github team, posts his details here, and has at least one commit into the publication, because I don't want to be the person who decides about a threshold (this is no promise, but we'll try). You all deserve it, as you are doing a great job for the community.

The manuscript is here: https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g We currently plan to submit to Nature Methods.

So, please post your details here if you want to be part of the paper.

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub https://github.com/bioconda/bioconda-recipes/issues/6323, or mute the thread https://github.com/notifications/unsubscribe-auth/AAVXdcd7PEY_yN1w_XCcxAQ37uS8Ftcpks5ssyUIgaJpZM4P6WWu.

matthieujung commented 6 years ago

Matthieu Jung Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS UMR 7104, Illkirch, 67404 France

Le 16 oct. 2017 à 11:42, Johannes Köster notifications@github.com<mailto:notifications@github.com> a écrit :

Dear @bioconda/allhttps://github.com/orgs/bioconda/teams/all, to create the author list of the Bioconda paper, we need your full name and affiliation. I hope to be able to include everybody who is part of the github team, posts his details here, and has at least one commit into the publication, because I don't want to be the person who decides about a threshold (this is no promise, but we'll try). You all deserve it, as you are doing a great job for the community.

The manuscript is here: https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g We currently plan to submit to Nature Methods.

So, please post your details here if you want to be part of the paper.

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHubhttps://github.com/bioconda/bioconda-recipes/issues/6323, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AeTKh1j9gh28XZSW38_B9QCR2zKRcpPqks5ssyUagaJpZM4P6WWu.

malloryfreeberg commented 6 years ago

Mallory Freeberg EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK ORCID: http://orcid.org/0000-0003-2949-3921

khourhin commented 6 years ago

Etienne Kornobis Epigenetic Regulation Unit, 28, rue du Docteur Roux Pasteur Institute, 75015 Paris, France

Thanks to you !

s-will commented 6 years ago

Sebastian Will

Institute for Theoretical Chemistry, University of Vienna, Währingerstraße 17, A-1090 Vienna, Austria

orcid.org/0000-0002-2376-9205

On 2017-10-16 11:42, Johannes Köster wrote:

Dear @bioconda/all https://github.com/orgs/bioconda/teams/all, to create the author list of the Bioconda paper, we need your full name and affiliation. I hope to be able to include everybody who is part of the github team, posts his details here, and has at least one commit into the publication, because I don't want to be the person who decides about a threshold (this is no promise, but we'll try). You all deserve it, as you are doing a great job for the community.

The manuscript is here: https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g We currently plan to submit to Nature Methods.

So, please post your details here if you want to be part of the paper.

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub https://github.com/bioconda/bioconda-recipes/issues/6323, or mute the thread https://github.com/notifications/unsubscribe-auth/ALTKrVwd4Ks6sT7tax8U-jVw76PYys-hks5ssyUXgaJpZM4P6WWu.

-- Dr. Sebastian Will TBI Waehringerstrasse 17 University of Vienna 1090 Wien, Austria

phone +43 1 4277 52749

bogemad commented 6 years ago

Daniel R Bogema NSW Department of Primary Industries Elizabeth Macarthur Agricultural Institute Menangle NSW 2568 Australia

iwohlers commented 6 years ago

Inken Wohlers Lübeck Interdisciplinary Platform for Genome Analytics (LIGA), Institutes of Neurogenetics and Integrative Experimental Genomics, University of Lübeck, Maria-Goeppert-Str. 1, 23562 Lübeck, Germany

pkrog commented 6 years ago

Pierrick Roger CEA, LIST, Laboratory for data analysis and systems' intelligence, MetaboHUB, France. http://orcid.org/0000-0001-8177-4873

On lun, ott 16 9:42, Johannes Köster wrote:

Dear @bioconda/all, to create the author list of the Bioconda paper, we need your full name and affiliation. I hope to be able to include everybody who is part of the github team, posts his details here, and has at least one commit into the publication, because I don't want to be the person who decides about a threshold (this is no promise, but we'll try). You all deserve it, as you are doing a great job for the community.

The manuscript is here: https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g We currently plan to submit to Nature Methods.

So, please post your details here if you want to be part of the paper.

-- You are receiving this because you are on a team that was mentioned. Reply to this email directly or view it on GitHub: https://github.com/bioconda/bioconda-recipes/issues/6323

tomkinsc commented 6 years ago

Christopher H. Tomkins-Tinch

Department of Organismic and Evolutionary Biology, Harvard University, 52 Oxford Street, Cambridge, MA 02138, USA

Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA

orcid.org/0000-0002-9114-6421

PatrickRWright commented 6 years ago

Patrick R. Wright Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany.

vodkatad commented 6 years ago

Elena Grassi Transcription and Chromatin Lab, Humanitas University, Rozzano (MI), Italy http://orcid.org/0000-0003-1066-927X

endrebak commented 6 years ago

Endre Bakken Stovner Department of Computer Science Norwegian University of Science and Technology

I have currently only added epic (my own software) and asciigenome so I should be low priority 🤣 .

lecorguille commented 6 years ago

Gildas Le Corguillé UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France

ggonnella commented 6 years ago

Giorgio Gonnella ZBH – Center for Bioinformatics, MIN-Fakultät, Universität Hamburg, 20146 Hamburg, Germany

Am 16. Oktober 2017 13:19:25 MESZ schrieb "Gildas Le Corguillé" notifications@github.com:

Gildas Le Corguillé UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France

-- You are receiving this because you are on a team that was mentioned. Reply to this email directly or view it on GitHub: https://github.com/bioconda/bioconda-recipes/issues/6323#issuecomment-336857069

-- Dr. Giorgio Gonnella

greed2411 commented 6 years ago

Jaivarsan B Department of Computer science Computer science with specialisation in Bioinformatics VIT University Vellore, India

On Mon 16 Oct, 2017, 16:51 Giorgio Gonnella notifications@github.com wrote:

Giorgio Gonnella ZBH – Center for Bioinformatics, MIN-Fakultät, Universität Hamburg, 20146 Hamburg, Germany

Am 16. Oktober 2017 13:19:25 MESZ schrieb "Gildas Le Corguillé" < notifications@github.com>:

Gildas Le Corguillé UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France

-- You are receiving this because you are on a team that was mentioned. Reply to this email directly or view it on GitHub:

https://github.com/bioconda/bioconda-recipes/issues/6323#issuecomment-336857069

-- Dr. Giorgio Gonnella

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub https://github.com/bioconda/bioconda-recipes/issues/6323#issuecomment-336857581, or mute the thread https://github.com/notifications/unsubscribe-auth/AUHuyscGzVqjFQPXrIf5nIiiM0DmeI-jks5sszxWgaJpZM4P6WWu .

liyawang commented 6 years ago

Liya Wang Cold Spring Harbor Laboratory Cold Spring Harbor, NY 11803

fgiacomoni commented 6 years ago

Franck Giacomoni Clermont Auvergne University, INRA, UNH, Human Nutrition Unit, PFEM, Metabolism Exploration Platform, MetaboHUB-Clermont, F-63000 Clermont-Ferrand, France

And really interesting to participate to the paper

Franck Giacomoni Biological computing & Metabolomics

From: Johannes Köster notifications@github.com Reply-To: bioconda/bioconda-recipes reply@reply.github.com Date: lundi 16 octobre 2017 11:43 To: bioconda/bioconda-recipes bioconda-recipes@noreply.github.com Cc: Franck Giacomoni franck.giacomoni@inra.fr, Team mention team_mention@noreply.github.com Subject: [bioconda/bioconda-recipes] Your details for the Bioconda paper author list (#6323)

Dear @bioconda/allhttps://github.com/orgs/bioconda/teams/all, to create the author list of the Bioconda paper, we need your full name and affiliation. I hope to be able to include everybody who is part of the github team, posts his details here, and has at least one commit into the publication, because I don't want to be the person who decides about a threshold (this is no promise, but we'll try). You all deserve it, as you are doing a great job for the community.

The manuscript is here: https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g We currently plan to submit to Nature Methods.

So, please post your details here if you want to be part of the paper.

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHubhttps://github.com/bioconda/bioconda-recipes/issues/6323, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AQDs-Qf1tmPLTOc6cuS28vF4rT2QhseQks5ssyUZgaJpZM4P6WWu.

jfallmann commented 6 years ago

Jörg Fallmann Bioinformatics Group Department of Computer Science and Interdisciplinary Center for Bioinformatics University of Leipzig, Härtelstraße 16-18, D-04107 Leipzig, Germany http://orcid.org/0000-0002-4573-9939

inodb commented 6 years ago

Ino de Bruijn Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY, USA http://orcid.org/0000-0001-5427-4750

On Mon, Oct 16, 2017, 7:24 AM Jaivarsan notifications@github.com wrote:

Jaivarsan B Department of Computer science Computer science with specialisation in Bioinformatics VIT University Vellore, India

On Mon 16 Oct, 2017, 16:51 Giorgio Gonnella notifications@github.com wrote:

Giorgio Gonnella ZBH – Center for Bioinformatics, MIN-Fakultät, Universität Hamburg, 20146 Hamburg, Germany

Am 16. Oktober 2017 13:19:25 MESZ schrieb "Gildas Le Corguillé" < notifications@github.com>:

Gildas Le Corguillé UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680, Roscoff, France

-- You are receiving this because you are on a team that was mentioned. Reply to this email directly or view it on GitHub:

https://github.com/bioconda/bioconda-recipes/issues/6323#issuecomment-336857069

-- Dr. Giorgio Gonnella

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub < https://github.com/bioconda/bioconda-recipes/issues/6323#issuecomment-336857581 , or mute the thread < https://github.com/notifications/unsubscribe-auth/AUHuyscGzVqjFQPXrIf5nIiiM0DmeI-jks5sszxWgaJpZM4P6WWu

.

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub https://github.com/bioconda/bioconda-recipes/issues/6323#issuecomment-336858076, or mute the thread https://github.com/notifications/unsubscribe-auth/ABRa9Cq6oriow3cgNyPictrzH5cqi02-ks5sszzngaJpZM4P6WWu .

eclarke commented 6 years ago

Erik Clarke Department of Microbiology University of Pennsylvania, Philadelphia 19104

bsennblad commented 6 years ago

Bengt Sennblad Dept of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Husargatan 3, SE-752 37 Uppsala, Sweden

orcid.org/0000-0002-4360-8003

16 okt. 2017 kl. 11:42 skrev Johannes Köster notifications@github.com:

Dear @bioconda/all https://github.com/orgs/bioconda/teams/all, to create the author list of the Bioconda paper, we need your full name and affiliation. I hope to be able to include everybody who is part of the github team, posts his details here, and has at least one commit into the publication, because I don't want to be the person who decides about a threshold (this is no promise, but we'll try). You all deserve it, as you are doing a great job for the community.

The manuscript is here: https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g https://www.authorea.com/189458/KlIqJYJOA5EPyUZjY9UG6g We currently plan to submit to Nature Methods.

So, please post your details here if you want to be part of the paper.

— You are receiving this because you are on a team that was mentioned. Reply to this email directly, view it on GitHub https://github.com/bioconda/bioconda-recipes/issues/6323, or mute the thread https://github.com/notifications/unsubscribe-auth/AFDJEBAXhRUT5zcfPWebNjIFtNRFXqpGks5ssyUSgaJpZM4P6WWu.

Bengt Sennblad NBIS, Scilifelab Dept of Cell and Molecular Biology Uppsala University bengt.sennblad@scilifelab.se

percyfal commented 6 years ago

Per Unneberg Dept of Cell and Molecular Biology, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Husargatan 3, SE-752 37 Uppsala, Sweden

mmiladi commented 6 years ago

Milad Miladi Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany. http://orcid.org/0000-0002-0173-3009