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biocore
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BIRDMAn
Bayesian Inferential Regression for Differential Microbiome Analysis
BSD 3-Clause "New" or "Revised" License
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How add covariables into default model?
#100
liucong-epi
opened
3 months ago
0
Update docs
#99
gibsramen
closed
11 months ago
0
nb.to_inference() error
#98
akhilkommala
closed
9 months ago
6
Update to v0.2.0
#97
gibsramen
closed
1 year ago
0
New documentation
#96
gibsramen
closed
1 year ago
0
Update environment.yml
#95
gibsramen
opened
1 year ago
0
Misc fixes
#94
gibsramen
closed
1 year ago
0
Fix #90
#93
gibsramen
closed
1 year ago
0
Add NB LME Single as default model
#92
gibsramen
closed
1 year ago
0
Better summary functions
#91
mortonjt
opened
1 year ago
0
concatenate_inference method broken
#90
mortonjt
closed
1 year ago
1
More informative failure messages
#89
mortonjt
opened
1 year ago
1
Update installation instruction to specify Python 3.8 or higher
#88
yangchen2
closed
1 year ago
0
Add model builder
#87
gibsramen
opened
1 year ago
0
Add InferenceData support to VI
#86
gibsramen
closed
1 year ago
0
Add VI inference and model building
#85
gibsramen
closed
1 year ago
1
Model fitting refactor
#84
gibsramen
closed
1 year ago
3
How to include random variables in the formula
#83
PaulaEterovick
opened
1 year ago
4
Kernel dying at model comparison with no apparent reason
#82
PaulaEterovick
opened
1 year ago
0
No CmdStan installation found
#81
jolespin
opened
1 year ago
9
What is the recommended method for specifying enriched or depleted features?
#80
jolespin
opened
1 year ago
1
Add demo to README/docs
#79
gibsramen
opened
2 years ago
0
Update to v0.1.0
#78
gibsramen
closed
2 years ago
0
Add docs page on Negative Binomial model
#77
gibsramen
closed
2 years ago
0
Add coords to summary docstring
#76
gibsramen
closed
2 years ago
0
Add summarize function
#75
gibsramen
closed
2 years ago
0
Update inference conversion function
#74
gibsramen
closed
2 years ago
0
Update default models & documentation
#73
gibsramen
closed
2 years ago
0
Add chunking support to ModelIterator
#72
gibsramen
closed
2 years ago
1
Create parallelization.rst
#71
yangchen2
closed
2 years ago
0
Create parallelization.rst
#69
yangchen2
closed
2 years ago
0
Update GH actions
#68
gibsramen
closed
2 years ago
0
updated documentation on installation
#67
yangchen2
closed
2 years ago
1
Support for Variational Inference
#66
mortonjt
opened
2 years ago
0
Not sure if you have checked out scCODA but this could useful for evaluating BIRDMAn
#65
jolespin
opened
2 years ago
0
Update docs with correct alr_to_clr params
#64
gibsramen
closed
3 years ago
0
An error in documentation
#63
jindongmin
closed
3 years ago
1
Update installation instructions for new ArviZ release
#62
gibsramen
closed
3 years ago
0
Address #56
#61
gibsramen
closed
3 years ago
0
Error thrown when converting SingleFeatureModel with only intercept
#60
gibsramen
closed
2 years ago
0
Bad draw error when running chunks
#59
gibsramen
opened
3 years ago
0
Initial commit of dev branch
#58
gibsramen
closed
3 years ago
0
concatenate_inferences is slow
#57
mortonjt
opened
3 years ago
0
Allow passing in CmdStanModel compilation arguments
#56
gibsramen
closed
2 years ago
0
Update to version 0.0.4
#55
gibsramen
closed
3 years ago
0
Misc fixes
#54
gibsramen
closed
3 years ago
0
Update inference conversion to be transform agnostic
#53
gibsramen
closed
3 years ago
0
Refactor model API for abstract parallelization
#52
gibsramen
closed
3 years ago
8
Abstracting out parallelism
#51
mortonjt
closed
3 years ago
1
Add Zenodo link
#50
gibsramen
closed
3 years ago
1
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