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BIRDMAn
Bayesian Inferential Regression for Differential Microbiome Analysis
BSD 3-Clause "New" or "Revised" License
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Add tests for parameter capture
#49
gibsramen
opened
3 years ago
0
Remove Dask integration
#48
gibsramen
closed
3 years ago
1
Remove metadata requirement for BaseModel
#47
gibsramen
closed
2 years ago
0
ENH : Adding support for chunking
#46
mortonjt
closed
3 years ago
6
Overflows can occur with generated quantities
#45
mortonjt
closed
3 years ago
6
Refactor conversion to InferenceData
#44
gibsramen
closed
3 years ago
8
Move _fit_single to directly under BaseModel
#43
gibsramen
closed
3 years ago
0
Add Zenodo link
#42
gibsramen
closed
3 years ago
0
Fix download links in custom LME documentation
#41
gibsramen
closed
3 years ago
0
Expose _fit_single in BaseModel class
#40
gibsramen
closed
3 years ago
0
posterior_predictive and log_likelihood could have sample names
#39
mortonjt
closed
3 years ago
2
Abstract Model API further
#38
gibsramen
closed
3 years ago
1
Fix bug where num_warmup isn't properly saved to a Model object
#37
gibsramen
closed
3 years ago
0
Temporary files usage
#36
mortonjt
closed
3 years ago
3
Cluster support isn't properly load balanced
#35
mortonjt
closed
3 years ago
3
Model base class is a little too restrictive
#34
mortonjt
closed
3 years ago
2
Write docs page on formulas
#33
gibsramen
opened
3 years ago
0
h5py version failing on GH Actions
#32
gibsramen
closed
3 years ago
1
Add option to specify number of warmup draws
#31
gibsramen
closed
3 years ago
0
Add HPC support
#30
gibsramen
closed
3 years ago
0
Installation issues
#29
gibsramen
closed
2 years ago
1
Proof-of-concept Slurm Cluster deployment
#28
mortonjt
closed
3 years ago
1
Parallelize combining multiple fits
#27
gibsramen
closed
3 years ago
0
Add QIIME 2 plugin
#26
gibsramen
opened
3 years ago
5
Initial release - big documentation upgrades
#25
gibsramen
closed
3 years ago
0
Update multinomial model
#24
gibsramen
closed
3 years ago
0
Update log-likelihood & posterior predictive import to inference
#23
gibsramen
closed
3 years ago
0
Restructure log-likelihood import
#22
gibsramen
closed
3 years ago
0
Fix single_fit_to_inference return type hint
#21
gibsramen
closed
3 years ago
0
Add NegativeBinomial LME model
#20
gibsramen
closed
3 years ago
0
Add option to specify number of warmup draws separately
#19
gibsramen
closed
3 years ago
0
Add R^2 score and LOO functions
#18
gibsramen
closed
3 years ago
0
Update posterior predictive & log likelihood import (+ misc changes)
#17
gibsramen
closed
3 years ago
0
Add ESS & Rhat
#16
gibsramen
closed
3 years ago
0
Use consistent dimensionality for posterior_predictive & log_likelihood between serial & parallel
#15
gibsramen
closed
3 years ago
1
Add visualization functions for rank plot and PPC plot
#14
gibsramen
closed
3 years ago
0
Add Hotelling T-squared test
#13
gibsramen
closed
3 years ago
0
Enable Mypy type checking
#12
gibsramen
closed
3 years ago
1
Enabling cluster support
#11
mortonjt
closed
3 years ago
1
Consider sklearn way of fitting
#10
gibsramen
opened
3 years ago
5
Add attribute to ArviZ objects about model type
#9
gibsramen
opened
3 years ago
0
Add to_inference_object specific for default models.
#8
gibsramen
closed
3 years ago
0
Refactor conversion of BIRDMAn model to ArviZ InferenceData
#7
gibsramen
closed
3 years ago
0
Move table input away from BIOM
#6
gibsramen
closed
2 years ago
2
Add ArviZ integration
#5
gibsramen
closed
3 years ago
0
Add Sphinx documentation
#4
gibsramen
closed
3 years ago
0
Switch from PyStan to cmstanpy
#3
gibsramen
closed
3 years ago
0
Add Poisson Lognormal model
#2
gibsramen
closed
2 years ago
1
Refactor model code to OOP
#1
gibsramen
closed
4 years ago
0
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