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biocore
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deblur
Deblur is a greedy deconvolution algorithm based on known read error profiles.
BSD 3-Clause "New" or "Revised" License
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Utility scripts for Deblur
#119
cuttlefishh
opened
7 years ago
11
Detect PHRED variant
#118
wasade
closed
7 years ago
4
Variable referenced before assignment
#117
wasade
closed
7 years ago
4
Updating version information
#116
mortonjt
closed
7 years ago
9
ambiguous version information
#115
wasade
closed
7 years ago
1
Update README.md
#114
amnona
closed
7 years ago
4
Support gz
#113
wasade
closed
7 years ago
4
updating version
#112
mortonjt
closed
8 years ago
2
fix bug in parallel positive mode
#111
amnona
closed
8 years ago
5
better place for the log file
#110
amnona
opened
8 years ago
1
split directory not deleted by default
#109
amnona
closed
7 years ago
2
add what you get in the documentation
#108
amnona
closed
7 years ago
1
problem when installing on mac
#107
amnona
closed
7 years ago
1
add progress bar
#106
amnona
opened
8 years ago
1
where are the deblur test files installed
#105
amnona
closed
6 years ago
3
add --version option
#104
amnona
closed
7 years ago
3
fix installation instructions
#103
amnona
closed
7 years ago
2
Replace sequence ids with something more readable
#102
jwdebelius
closed
7 years ago
5
Invalid value for --neg-ref-db-fp
#101
mortonjt
closed
6 years ago
3
Warning/documentation for input directory
#100
mortonjt
closed
7 years ago
1
Adding test for script
#99
mortonjt
closed
8 years ago
3
BUGFIX: default negative database was set incorrectly
#98
amnona
closed
8 years ago
8
testing log files
#97
mortonjt
closed
7 years ago
2
try to fix the filtering bug
#96
amnona
closed
8 years ago
9
Updating setup.py to reflect change
#95
mortonjt
closed
8 years ago
1
fix: also work with a directory of .fastq files
#94
amnona
closed
8 years ago
4
Updating setup to reflect pypi
#93
mortonjt
closed
8 years ago
1
Adding changelog and bumping up version
#92
mortonjt
closed
8 years ago
3
Trim flags are documented incorrectly
#91
cuttlefishh
closed
7 years ago
2
make nicer --seqs-fp and output
#90
amnona
closed
7 years ago
1
delete temp files during run
#89
amnona
closed
7 years ago
1
add positive and negative reference db flags
#88
amnona
closed
8 years ago
5
add post-deblur positive filtering for negative mode
#87
amnona
closed
8 years ago
14
Update README.md
#86
mortonjt
closed
8 years ago
2
Update default values on the script
#85
josenavas
closed
7 years ago
1
BUG/TST: verify an empty sequence file works gracefully
#84
wasade
closed
8 years ago
10
BLD: graft on support files
#83
wasade
closed
8 years ago
2
deblur from pip fails
#82
wasade
closed
7 years ago
3
Don't throw away error reads
#81
amnona
closed
6 years ago
1
sortmerna problem from biocore
#80
amnona
closed
7 years ago
6
add taxonomy script/embed in pipeline
#79
amnona
closed
7 years ago
2
auto read length detection
#78
amnona
closed
7 years ago
1
BUG : too many open files when splitting on mac
#77
amnona
opened
8 years ago
6
bugfix: 0 read fasta raised an error instead of continue
#76
amnona
closed
8 years ago
19
add a test for a sample with 0 reads
#75
amnona
closed
8 years ago
0
progress indication
#74
amnona
closed
7 years ago
2
create the log file in the output directory
#73
amnona
opened
8 years ago
1
handle multiple input demultiplexed fasta files
#72
amnona
closed
6 years ago
2
change number of threads flag
#71
amnona
closed
7 years ago
1
Prep for alpha release
#70
mortonjt
closed
8 years ago
3
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