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biocore
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deblur
Deblur is a greedy deconvolution algorithm based on known read error profiles.
BSD 3-Clause "New" or "Revised" License
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new release: mix case fixing
#169
sjanssen2
closed
6 years ago
1
fix lower case nucleotides
#168
sjanssen2
closed
6 years ago
6
Improve execution time
#167
karlrl
closed
6 years ago
2
Update MacOS Matplotlib troubleshooting item
#166
karlrl
closed
5 years ago
2
How to filter chimera for post-deblur data?
#165
Listen-Lii
closed
6 years ago
3
Uppercase
#164
tanaes
opened
6 years ago
1
Installation hiccup: pytz>= distribution not found, required by pandas
#163
kevinmcc21
closed
6 years ago
21
Can your project be used to deblurthe defocus image?
#162
alanMachineLeraning
closed
7 years ago
1
Implementation detail
#161
wwood
closed
6 years ago
2
REL: Update version strings and changelog
#160
ElDeveloper
closed
7 years ago
1
BLD: setting vsearch req to >= 2.0.3, seems to work with 2.5.0 w/o issue
#159
wasade
closed
7 years ago
5
update required vsearch version
#158
gregcaporaso
closed
6 years ago
3
Should sample IDs be allowed to have _ characters?
#157
wasade
closed
7 years ago
1
Add left trim
#156
wasade
closed
7 years ago
5
Release version 1.0.3
#155
ElDeveloper
closed
6 years ago
1
Support "left trimming" on sequences
#154
ElDeveloper
closed
7 years ago
0
Test version change
#153
ElDeveloper
closed
7 years ago
6
possible to upgrade mafft dependency to 7.310?
#152
jairideout
closed
7 years ago
8
BUG: Add --preservecase to MAFFT
#151
ElDeveloper
closed
7 years ago
3
Errors: IndexError: index returns 3-dim structure and ERROR: `3` is not supported in --blast [STRING].
#150
smteo
closed
7 years ago
3
output fasta file has no headers
#149
nvpatin
closed
7 years ago
5
Deblur outputs lowercase characters
#148
mortonjt
closed
7 years ago
8
Update __init__.py to reflect new release
#147
mortonjt
closed
7 years ago
1
replace e-value with bit-score filtering
#146
amnona
closed
7 years ago
8
Errno 24: Too many open files (ubuntu)
#145
ElinVidevall
closed
6 years ago
3
FileNotFoundError: [Errno 2] No such file or directory
#144
bstamps
closed
7 years ago
2
I've got my deblurred sequences. How do I run diversity analyses on the biom file?
#143
slvrshot
closed
7 years ago
4
Update changelog
#142
mortonjt
closed
7 years ago
0
Update version for release
#141
mortonjt
closed
7 years ago
2
Thresholds
#140
wasade
closed
7 years ago
9
CRITICAL: similarity and coverage thresholds are not used in positive mode
#139
wasade
closed
7 years ago
7
REL: bump to 1.0.0-dev
#138
wasade
closed
7 years ago
3
Issue 136
#137
wasade
closed
7 years ago
8
Denote v1.0
#136
wasade
closed
6 years ago
0
address #133
#135
amnona
closed
7 years ago
7
Actually skip trim seqs
#134
wasade
closed
7 years ago
1
Undescribed output files
#133
wasade
closed
6 years ago
1
Any issues encountered during release testing
#132
wasade
closed
7 years ago
5
Milestone1
#131
amnona
closed
7 years ago
6
CLI default values
#130
amnona
closed
7 years ago
19
artifacts.fa is not correctly formatted
#129
gregcaporaso
closed
7 years ago
3
--min-reads default is zero
#128
wasade
closed
7 years ago
4
doc string for negate is inaccurate
#127
wasade
closed
7 years ago
4
problem with scikit-bio on mac
#126
amnona
closed
7 years ago
1
Inconsistency in README and defaults for trim length
#125
wasade
closed
7 years ago
1
skip trimming option
#124
mortonjt
closed
7 years ago
6
add a skip trim option
#123
antgonza
closed
7 years ago
1
support for other amplicon types
#122
cuttlefishh
closed
7 years ago
6
missing details in main description in README.md
#121
cuttlefishh
closed
7 years ago
1
check if failed on all samples - say something
#120
amnona
closed
7 years ago
2
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