issues
search
biocore
/
emp
Code repository of the Earth Microbiome Project.
http://www.earthmicrobiome.org
BSD 3-Clause "New" or "Revised" License
154
stars
68
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
minor updates before publication
#83
cuttlefishh
closed
6 years ago
0
Manuscript
#82
cuttlefishh
closed
6 years ago
0
major overhaul to main README.md
#81
cuttlefishh
closed
7 years ago
1
updated ftp address
#80
cuttlefishh
closed
7 years ago
2
raw data not available
#79
rrohwer
closed
6 years ago
6
Adding Golay seqs to 16S reverse primers for dual barcoding
#78
tarunaaggarwal
closed
7 years ago
0
updates to README files
#77
cuttlefishh
closed
7 years ago
2
Adding more code for EMP manuscript submission
#76
cuttlefishh
closed
7 years ago
3
updating scripts subdirectory and README.md file
#75
cuttlefishh
closed
7 years ago
0
Notebooks for EMP Nature submission
#74
cuttlefishh
closed
7 years ago
3
Added ipynb for comparison with ref dbs
#73
tanaes
closed
7 years ago
1
add sepp script
#72
smirarab
closed
7 years ago
0
v2: compile sequence/OTU statistics
#71
sjanssen2
closed
7 years ago
1
Notebooks for EMP 25k paper
#70
cuttlefishh
closed
7 years ago
3
new directory structure & notebooks
#69
cuttlefishh
closed
7 years ago
1
discrepancy in 806rB reverse primer sequence
#68
thwilkinson
closed
6 years ago
11
compute alpha diversity using scikit bio
#67
ekopylova
closed
7 years ago
12
NBs for creating sub-sets, filtering to a sub-set and counting observations
#66
sjanssen2
closed
7 years ago
1
filter files for sub-sets
#65
sjanssen2
closed
8 years ago
3
Moving emp20k_metadata_refine notebook from my repo to biocore
#64
cuttlefishh
closed
7 years ago
8
Added a notebook for sub-sampling the EMP samples.
#63
sjanssen2
closed
8 years ago
7
adding 2 emp metadata notebooks for code review
#62
cuttlefishh
closed
8 years ago
0
random forests classifier
#61
cuttlefishh
opened
8 years ago
0
total number of OTUs
#60
cuttlefishh
closed
6 years ago
4
Sequences dropped by split libraries
#59
antgonza
opened
8 years ago
0
compile sequence/OTU statistics
#58
sjanssen2
closed
7 years ago
4
database difference scripts
#57
ekopylova
closed
7 years ago
1
reformat members.md so it's easier to check
#56
colinbrislawn
closed
7 years ago
7
Update emp-laboratories.md
#55
colinbrislawn
closed
7 years ago
2
WIP: Fix documentation
#54
josenavas
closed
7 years ago
9
updates to EMP website
#53
colinbrislawn
closed
8 years ago
1
Markdown versions of EMP webpages for collaborative edit
#52
cuttlefishh
closed
8 years ago
1
website: Affiliations, Publications, Meetings, Logo
#51
cuttlefishh
closed
6 years ago
5
website: EMP Protocols and Standards
#50
cuttlefishh
closed
6 years ago
5
website: Getting Involved
#49
cuttlefishh
closed
6 years ago
2
website: Defining the Tasks
#48
cuttlefishh
opened
8 years ago
2
Post and improve SOPs
#47
colinbrislawn
closed
6 years ago
14
16S reference database effects
#46
cuttlefishh
closed
6 years ago
11
primer effects before/after introduction of new primers
#45
cuttlefishh
opened
8 years ago
6
similarity between biomes or sample types
#44
cuttlefishh
opened
8 years ago
1
update data URLs
#43
cuttlefishh
closed
6 years ago
1
Script and data to generate metadata templates for EMP
#42
cuttlefishh
closed
8 years ago
18
Slides
#41
cuttlefishh
closed
8 years ago
0
driving factors of interest
#40
cuttlefishh
opened
8 years ago
0
blooming taxa analysis
#39
cuttlefishh
opened
8 years ago
15
global modeling
#38
cuttlefishh
opened
8 years ago
0
Link to publicly available slides on Google Drive
#37
cuttlefishh
closed
8 years ago
0
Updating URLs
#36
josenavas
closed
8 years ago
9
load 10k data files
#35
gregcaporaso
closed
8 years ago
2
Qiime meta-analysis file download issues
#34
alexdthomas
closed
10 years ago
5
Previous
Next