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biocore
/
gneiss
compositional data analysis toolbox
https://biocore.github.io/gneiss/
BSD 3-Clause "New" or "Revised" License
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Expose all formulas in the mixed effects models
#248
mortonjt
opened
6 years ago
0
data available for gneiss python tutorials?
#247
VivyanCyril
closed
6 years ago
1
Proportion plot offset
#246
mortonjt
opened
6 years ago
0
Make sure the ordering is fixed in balance_barplots
#245
mortonjt
opened
6 years ago
0
Need a sample / feature palette for the proportion_plots
#244
mortonjt
opened
6 years ago
0
Release cycle agenda
#243
mortonjt
opened
6 years ago
0
More intuitive errors / checking
#242
mortonjt
closed
6 years ago
1
Enable workflows
#241
mortonjt
opened
6 years ago
0
Adding FDR values for download
#240
mortonjt
closed
6 years ago
1
Residuals for specific covariates
#239
mortonjt
opened
6 years ago
0
Standard error or residual
#238
mnhuda
closed
6 years ago
1
Formula
#237
mnhuda
closed
6 years ago
1
heat maps are not centered in white
#236
antgonza
opened
7 years ago
0
confusing colors in projected projections
#235
antgonza
opened
7 years ago
0
Proportion plots
#234
mortonjt
closed
6 years ago
5
proportion plots
#233
mortonjt
closed
6 years ago
1
Need random states
#232
mortonjt
opened
7 years ago
0
Heatmaps are a tad off
#231
mortonjt
opened
7 years ago
0
Refactor regression summary
#230
mortonjt
opened
7 years ago
0
Add in utility method for subsetting
#229
mortonjt
opened
7 years ago
0
Better residual analysis
#228
mortonjt
opened
7 years ago
0
Matrix completion
#227
mortonjt
opened
7 years ago
0
Replace pandas dataframes with xarray
#226
mortonjt
opened
7 years ago
0
scikit-learn refactor
#225
mortonjt
opened
7 years ago
0
Better APIs for summarizing taxa
#224
mortonjt
opened
7 years ago
0
Improved Ward clustering
#223
mortonjt
opened
7 years ago
0
Add in robustness parameter to heatmaps
#222
mortonjt
opened
7 years ago
0
DOC: Updating changelog + version number for minor release
#221
mortonjt
closed
7 years ago
2
Heatmap colorbar
#220
mortonjt
closed
7 years ago
6
Cf tutorial fix
#219
mortonjt
closed
6 years ago
0
Bayesian Regression
#218
mortonjt
opened
7 years ago
0
Regression modules need to accept tree as input
#217
mortonjt
opened
7 years ago
0
Boxplots for proportions
#216
mortonjt
closed
6 years ago
1
Better errors for garbage trees
#215
mortonjt
opened
7 years ago
0
Q2 plugin refactor
#214
mortonjt
closed
7 years ago
4
Make sure that numerator and denominator colors are consistent
#213
mortonjt
opened
7 years ago
0
Tutorial
#212
mortonjt
closed
7 years ago
6
ladderize acting funny
#211
mortonjt
closed
7 years ago
1
Update README.md
#210
mortonjt
closed
7 years ago
2
Links in README are broken
#209
cuttlefishh
closed
7 years ago
1
Feature selection
#208
mortonjt
closed
7 years ago
1
Median and dispersion estimators
#207
mortonjt
opened
7 years ago
0
Match metadata to tables for every qiime2 command
#206
mortonjt
closed
7 years ago
1
FIX: Label axes
#205
mortonjt
closed
7 years ago
1
Balances are backwards
#204
mortonjt
closed
7 years ago
1
ENH: Changing types over to Hierarchy instead of Phylogeny[Rooted]
#203
mortonjt
closed
7 years ago
3
Change `Phylogeny[Rooted]` types to `Hierarchy` types
#202
mortonjt
closed
7 years ago
0
Updating heatmaps in notebook
#201
mortonjt
closed
7 years ago
5
Heatmap fix
#200
mortonjt
closed
7 years ago
1
Outstanding doc issues
#199
mortonjt
closed
7 years ago
0
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