biocore mds-approximations issues

biocore / mds-approximations

Multidimensional scaling algorithms for microbiology-ecology datasets.

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issues

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fixing travis

#48 antgonza closed 5 years ago
1
Clean up test datasets

#47 HannesHolste closed 5 years ago
6
PCoA updates

#46 HannesHolste closed 5 years ago
11
Generate random (gaussian or realistic) distance matrices

#45 HannesHolste closed 6 years ago
4
Port codebase to Python 3

#44 HannesHolste closed 6 years ago
4
eigsh convergence fix 2

#43 HannesHolste closed 6 years ago
3
Kruskal CLI argument order fix & rename for clarity

#42 HannesHolste closed 6 years ago
1
Procrustes calculations with monte carlo analysis

#41 HannesHolste closed 6 years ago
3
Handle edge case of eigsh not converging

#40 HannesHolste closed 6 years ago
2
Kruskal stress

#39 HannesHolste closed 6 years ago
1
Script CLI & import fixes

#38 HannesHolste closed 6 years ago
1
Refactor distance matrix centering code

#37 HannesHolste closed 6 years ago
3
Port f_matrix and e_matrix improvements to skbio

#36 HannesHolste opened 6 years ago
0
FSVD performance & accuracy improvements

#35 HannesHolste closed 6 years ago
8
Add NaN proportion explained to pcoas that don't return eigenvalues

#34 HannesHolste closed 7 years ago
1
Fix for axis label generation for nystrom and scmds

#33 HannesHolste closed 7 years ago
1
Add coveralls configuration

#32 HannesHolste closed 8 years ago
8
Implement ssvd and basic test

#31 HannesHolste closed 8 years ago
1
Write more comprehensive unit tests for algorithms

#30 HannesHolste opened 8 years ago
0
Implement eigh and test

#29 HannesHolste closed 8 years ago
5
Implement eigsh and a basic test

#28 HannesHolste closed 8 years ago
0
Implement FSVD and its test

#27 HannesHolste closed 8 years ago
2
SVD PCoA

#26 HannesHolste closed 8 years ago
0
Fix eigenvector dimensionality reduction

#25 HannesHolste closed 8 years ago
4
Preprocess distance matrix & use OrdinationResults

#24 HannesHolste closed 8 years ago
0
Preprocess distance matrix & use OrdinationResults

#23 HannesHolste closed 8 years ago
0
SSVD unit testing problems

#22 HannesHolste closed 8 years ago
2
Update skbio to 0.4.2 - Fixes #19

#21 HannesHolste closed 8 years ago
0
[WIP]: Fsvd

#20 HannesHolste closed 8 years ago
4
Error importing skbio OrdinationResults

#19 HannesHolste closed 8 years ago
3
Further optimize existing algorithms

#18 HannesHolste opened 8 years ago
0
add documentation on how to generate benchmarks and run mdsa

#17 HannesHolste opened 8 years ago
0
Algorithms fail with 10x10 test distance_matrix

#16 HannesHolste closed 8 years ago
5
Refactored codebase to be modular and built CLI to run and test algorithms

#15 HannesHolste closed 8 years ago
9
[WIP]: SVD

#14 HannesHolste closed 8 years ago
5
Update .gitignore

#13 HannesHolste closed 8 years ago
0
Another potential method to benchmark?

#12 mortonjt opened 9 years ago
1
Update setup.py

#11 mortonjt closed 9 years ago
1
WIP: Cogent porrt

#10 mortonjt closed 9 years ago
5
Update .travis.yml

#9 mortonjt closed 9 years ago
0
Python=3?

#8 mortonjt closed 9 years ago
8
ENH: Adds base code to make the package pip-installable

#7 ElDeveloper closed 9 years ago
6
Make the project a python package

#6 ElDeveloper closed 9 years ago
0
add ipython notebook that collates results from benchmarks

#5 antgonza opened 9 years ago
0
add benchmark scripts

#4 antgonza closed 6 years ago
9
add travis and coveralls to repo

#3 antgonza closed 8 years ago
0
Point to biom tables to process

#2 antgonza opened 9 years ago
1
Adding code to call all methods

#1 antgonza closed 6 years ago
6