biocorecrg allele_specific_RNAseq issues

biocorecrg / allele_specific_RNAseq

Allele Specific RNAseq

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issues

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Additional features for summing allele counts

#44 Ni-Ar opened 10 months ago
3
Error executing process > 'getReadLength'

#43 tmattimoe closed 1 year ago
1
Getting Scripts to observe a hybridness

#42 luckysardar opened 1 year ago
1
Singularity default in make_anno.nf config

#41 luckysardar closed 1 year ago
20
QConRawReads terminated for an unknown reason

#40 mercedes-barrero closed 2 years ago
0
mapping error

#39 mercedes-barrero closed 2 years ago
2
strandness

#38 mercedes-barrero closed 2 years ago
2
High percentage of duplicated reads

#37 mercedes-barrero closed 2 years ago
4
Mapping error

#36 mercedes-barrero closed 2 years ago
3
Problem running nextflow

#35 mercedes-barrero closed 2 years ago
4
make_anno with data from reference genome strain cross

#34 Ni-Ar closed 5 months ago
4
Making it public

#33 MoritzBauer closed 3 years ago
1
Wrong title

#32 MoritzBauer closed 3 years ago
1
module makeAnno

#31 llonchsilvia closed 3 years ago
6
nextflow doesn't run

#30 llonchsilvia closed 3 years ago
0
how to install singularity

#29 llonchsilvia closed 3 years ago
4
Counts output file description

#28 MoritzBauer closed 3 years ago
5
varcut = 1

#27 MoritzBauer closed 3 years ago
3
Symbolic link for data

#26 MoritzBauer closed 3 years ago
2
params.config reads

#25 MoritzBauer closed 3 years ago
1
$baseDir Change

#24 MoritzBauer closed 3 years ago
9
Running the pipeline Params.config

#23 MoritzBauer closed 3 years ago
0
Input data

#22 MoritzBauer closed 3 years ago
3
Private vs Public

#21 MoritzBauer closed 3 years ago
5
Description adding Singularity to bash

#20 MoritzBauer closed 3 years ago
2
ant-login vs. nextflow

#19 MoritzBauer closed 3 years ago
4
Dependecies Installation Path

#18 MoritzBauer closed 3 years ago
3
Nextflow install

#17 MoritzBauer closed 3 years ago
24
Docker/Singularity install

#16 MoritzBauer closed 3 years ago
4
Ensembl Annotation

#15 MoritzBauer closed 3 years ago
3
SNP file not found

#14 MoritzBauer closed 3 years ago
4
Can't install it

#13 MoritzBauer closed 3 years ago
5
groupCounts terminated for an unknown reason -- Likely terminated by the external system

#12 Jacq3lin3 closed 4 years ago
7
parseVCF.py usage

#11 Jacq3lin3 closed 4 years ago
1
Singularity path error

#10 Jacq3lin3 closed 4 years ago
7
SNP Cut-off output

#9 Jacq3lin3 closed 4 years ago
17
Content of the `Counts` folder

#8 Jacq3lin3 closed 4 years ago
5
Running on single end data

#7 Jacq3lin3 closed 4 years ago
3
Sort and index bam files

#6 Jacq3lin3 closed 4 years ago
2
RNA SNP QC

#4 MoritzBauer closed 4 years ago
6
Hybridness of Chromosomes

#3 MoritzBauer closed 3 years ago
3
-with-tower flag requires nextflow version 20?

#2 Jacq3lin3 closed 4 years ago
2