Open emyyue opened 2 months ago
Hi @emyyue,
Apologize for the delayed response.
I believe this issue is related to pypath. Installing pypath from this fork: https://github.com/dbdimitrov/pypath/tree/metalinks should resolve the issue.
Please let us know if we can provide anything else.
Daniel
PS. a neo4j dump if you share an email can be downloaded from here: https://zenodo.org/records/11066196, and any auxiliary files are downloadable from here: https://github.com/saezlab/MetalinksDB/tree/main/metalinksDB
Hi! Installation runs with conda. Poetry install only manages to install bioregistry when python version was set to
python = "~3.11"
Now I am trying to create the KG with
python create_knowledge_graph.py
This is the error I stumble in. Any idea how to fix it?Best