metalinks-biocypher

This is the Repo for the Metalinks database, which collects and curates knowledge around metabolite-protein interactions. You can query our dataset in our web app here: MetalinksDB webpage

Reproducing Metalinks

1. Clone this repository.

git clone https://github.com/biocypher/metalinks.git
cd metalinks

2. Install the required packages.

poetry install

or

conda env create -f env.yml
conda activate metalinks

To create the knowledge graph, run the following within the created environment:

python create_knowledge_graph.py

All additional files and a webpage dump can be found here: zenodo