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biodiverse
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ubms
Fit models to data from unmarked animals using Stan. Uses a similar interface to the R package 'unmarked', while providing the advantages of Bayesian inference and allowing estimation of random effects.
https://hmecology.github.io/ubms/
GNU General Public License v3.0
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Maybe `ranef` shouldn't add the mean value to the random effect?
#82
kenkellner
closed
1 week ago
0
Add package anchors to Rd links
#81
kenkellner
closed
2 weeks ago
0
Update dependencies
#80
kenkellner
closed
2 weeks ago
0
Fix comparison warnings in `simz` C++
#79
kenkellner
closed
2 weeks ago
0
Migrate spatial predictions from raster to terra
#78
jniedballa
closed
2 weeks ago
1
Remove weights from `modSel` output
#77
kenkellner
closed
2 weeks ago
0
Better way to get access to `eta` from spatial models
#76
kenkellner
closed
1 week ago
0
error when plotting gof() object
#75
jaymwin
closed
9 months ago
1
`fitList` is interfering with unmarked's `fitList`
#74
kenkellner
closed
2 weeks ago
1
Random slopes not woring
#73
tapirus07
closed
9 months ago
12
Comment model code
#72
VLucet
opened
11 months ago
4
Update deprecated syntax for future rstan compatibility
#71
andrjohns
closed
1 year ago
1
Fix Makevars to avoid CRAN warning
#70
jgabry
closed
1 year ago
1
indexing off
#69
bgoodri
closed
1 year ago
3
RSTAN
#68
sergewich
closed
1 year ago
2
LOO compatibility
#67
NathanGT15
closed
1 year ago
2
Returning log-likelihood optional to avoid huge model files
#66
jniedballa
closed
2 weeks ago
11
Add K-fold cross-validation method
#65
kenkellner
closed
1 year ago
1
Add laplace prior
#64
JustinCally
closed
2 years ago
4
Expand available prior distributions
#63
JustinCally
closed
2 weeks ago
0
Add K-fold cross validation function
#62
kenkellner
closed
1 year ago
1
Speed up gof for large models
#61
jniedballa
closed
2 years ago
3
Allow lists as input for fitList?
#60
jniedballa
closed
2 years ago
1
check_formula(): warning and incomplete check for long formula
#59
jniedballa
closed
2 years ago
3
bayes R2 for occupancy models
#58
JustinCally
opened
2 years ago
2
Attempting to explore the spatial autocorrelation of residuals
#57
gpandradep
closed
2 years ago
2
Excluding fixed effects in model predictions
#56
matt-w-rees
closed
2 years ago
2
Nested random effects?
#55
matt-w-rees
closed
2 years ago
2
Add support for combined distance/removal models
#54
kenkellner
closed
4 months ago
0
Set prior distribution on random effect standard deviation
#53
kenkellner
closed
3 years ago
1
Don't include random effects in posterior_plots by default
#52
kenkellner
closed
3 years ago
0
Runtime calculation is wrong for models not run in parallel
#51
kenkellner
closed
3 years ago
0
How did you fix the Clang-UBSAN in 1.0.2 release?
#50
formidify
closed
3 years ago
2
Set custom prior distributions
#49
kenkellner
closed
3 years ago
1
Compatibility with next rstan
#48
andrjohns
closed
3 years ago
2
Specify model name in Stan call
#47
kenkellner
closed
3 years ago
0
Add model runtime to summary output
#46
kenkellner
closed
3 years ago
0
multi-season occupancy?
#45
cperk
closed
3 years ago
6
Add support for offsets to all models
#44
kenkellner
closed
3 years ago
0
Fix line ending warnings
#43
kenkellner
closed
3 years ago
0
Custom priors
#42
kenkellner
closed
3 years ago
1
Decide what tests to run on CRAN
#41
kenkellner
closed
3 years ago
0
split_formula doesn't work for long formulas
#40
kenkellner
closed
3 years ago
0
Add support for community occupancy models
#39
kenkellner
opened
3 years ago
0
Add offset support
#38
kenkellner
closed
3 years ago
0
ubms estimates do not compare to unmarked estimates
#37
ManuelSpinola
closed
3 years ago
6
plot_spatial() doesn't work for count models
#36
kenkellner
closed
3 years ago
0
Implement Restricted Spatial Regression (RSR) for single-season models
#35
kenkellner
closed
3 years ago
0
Error in plot_residual on occupancy parameter
#34
gpandradep
closed
3 years ago
1
Default priors too informative in some cases
#33
kenkellner
closed
3 years ago
0
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