Measurement Ca release and Cells synchronicity - Humsa Venkatesh

Setup

1 - Download Anaconda, a free installer that includes Python and all the common scientific packages.

2- Clone the repository

git clone https://github.com/bioimage-analysis/HumsaTraces

3- Go into the directory

cd HumsaTraces/

4- Create a conda environment with an Ipython kernel:

 conda env create -f environment.yml -n caiman ipykernel

5- Activate your conda environment:

source activate name_env

Usage

cd to the notebook directory and lunch jupyter notebook:

jupyter notebook

Contact

Cedric Espenel
E-mail: espenel@stanford.edu