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bioinfo-chru-strasbourg
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howard
Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery
GNU Affero General Public License v3.0
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add calculation RENAME_INFO_FIELDS based on fields_to_rename like exp…
#309
antonylebechec
closed
4 days ago
0
Add fields to rename or remove before export #307, docs #4
#308
antonylebechec
closed
6 days ago
0
Add a step to rename INFO/tags
#307
antonylebechec
opened
6 days ago
0
Add example of param in YAML format #304
#306
antonylebechec
closed
1 week ago
0
Add yaml format config and param file #304, update docs #4
#305
antonylebechec
closed
1 week ago
0
Use YAML instead of JSON
#304
antonylebechec
closed
1 week ago
1
fix calcultion config file in param
#303
antonylebechec
closed
1 week ago
0
Fix prioritization score when VaRank mode, add keywords for VaRank mo…
#302
antonylebechec
closed
1 week ago
0
fix explode infos if other table, remove forcing explode for calculat…
#301
antonylebechec
closed
2 weeks ago
0
fix bigwig annotation info fields on header #298
#300
antonylebechec
closed
2 weeks ago
0
Add calculation on another table, like transcripts, and docs #4
#299
antonylebechec
closed
2 weeks ago
0
Fix the missing info fields for bigwig annotation
#298
Elyanes
closed
2 weeks ago
1
improve annotation parquet with BED format
#297
antonylebechec
closed
4 weeks ago
0
Add BigWig annotation #295, docs #4
#296
antonylebechec
closed
1 month ago
0
Add BigWig annotation
#295
antonylebechec
closed
2 weeks ago
1
CADD annotations from offline model (docker + snakemake)
#294
JbaptisteLam
opened
1 month ago
0
Common func and associated test update
#293
JbaptisteLam
closed
1 month ago
0
fix transcript bubble, INFO/fields into VCF, header
#292
antonylebechec
closed
1 month ago
0
Update docker tools
#291
JbaptisteLam
closed
1 month ago
0
Fix nomen calculation with transcripts in table column, and docs
#290
antonylebechec
closed
1 month ago
0
fix commons function transcripts_file_to_df
#289
antonylebechec
closed
1 month ago
0
Fix commons, add plugin transcripts_check
#288
antonylebechec
closed
1 month ago
0
fix user guide #4
#287
antonylebechec
closed
1 month ago
0
Docs and help
#286
antonylebechec
closed
1 month ago
0
Add transcripts options #256 into parameters help docs #4
#285
antonylebechec
closed
1 month ago
0
fix test commons
#284
antonylebechec
closed
1 month ago
0
clean docs help functions #4
#283
antonylebechec
closed
1 month ago
0
Docs and help
#282
antonylebechec
closed
1 month ago
0
Fixes packages versions
#281
antonylebechec
closed
1 month ago
0
fix duckdb version on docker container, by forcing version ==1.0.0
#280
antonylebechec
closed
2 months ago
0
Log messages fixes #266
#279
antonylebechec
closed
2 months ago
0
Transcript bubble view
#278
antonylebechec
closed
2 months ago
0
Add trancript mapping and filter, and manage version #256
#277
antonylebechec
closed
2 months ago
0
Add options to control transcripts view struct #256
#276
antonylebechec
closed
2 months ago
0
Transcript bubble view
#275
antonylebechec
closed
2 months ago
0
Match between Ensembl / Refseq transcript during prioritization step
#274
JbaptisteLam
closed
2 months ago
1
Export only prioritize transcript annotation
#273
JbaptisteLam
closed
2 months ago
2
Error in prioritization step
#272
JbaptisteLam
opened
2 months ago
1
Add option only_info #268, docs #4
#271
antonylebechec
closed
2 months ago
0
Query tool - disable output print
#270
antonylebechec
closed
2 months ago
1
improve type for dbnsfp databases #268, and improve tests
#269
antonylebechec
closed
2 months ago
0
Improve type for dbNSFP
#268
antonylebechec
closed
2 months ago
2
Improve prioritization adding SQL syntax, PZClass and extra sections …
#267
antonylebechec
closed
2 months ago
0
Annotation file not found
#266
JbaptisteLam
closed
2 months ago
1
Add prioritization in SQL format
#265
antonylebechec
closed
2 months ago
2
Improve samples identification
#264
antonylebechec
closed
2 months ago
0
Manage sample columns in input file
#263
antonylebechec
closed
2 months ago
2
Add INFO annotations for transcripts prioritization #256
#262
antonylebechec
closed
2 months ago
0
Sample columns disappear
#261
JbaptisteLam
closed
2 months ago
1
Transcript bubble view
#260
antonylebechec
closed
2 months ago
0
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