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neusomatic
NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
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Ensemble method error in preprocess.py & generate_dataset.py
#37
smalysz1
closed
5 years ago
4
ValueError: Image must be a numpy error
#36
ozlemmuslu
closed
5 years ago
3
speed up
#35
roger-liu-bina
closed
5 years ago
0
Invalid VCF format [postprocess.py]
#34
hdetering
closed
5 years ago
1
RuntimeError: The size of tensor a (26) must match the size of tensor b (3) at non-singleton dimension 0 (call.py)
#33
kiranchari
closed
5 years ago
4
scan_alignments using up all remaining disk space (>100GB) and fails
#32
kiranchari
closed
5 years ago
8
Compatibility fix
#31
msahraeian
closed
5 years ago
2
Update to python3
#30
msahraeian
closed
5 years ago
2
Supplementary materials for NeuSomatic paper
#29
gunjanbaid
closed
5 years ago
2
fails in run_test.sh for "No such file 'work_standalone/work_tumor_without_q/work.0/count.bed''
#28
mingyi-wang
closed
5 years ago
1
updated version to 0.1.3
#27
msahraeian
closed
5 years ago
0
Fix mkdir
#26
msahraeian
closed
5 years ago
1
Speedup MSA with qualities calculation
#25
roger-liu-bina
closed
5 years ago
3
CUDA example
#24
lmiroslaw
closed
5 years ago
3
RuntimeError: Expected object of type torch.DoubleTensor but found type torch.FloatTensor for argument #2 'weight'
#23
jingmeng-bioinformatics
closed
5 years ago
3
updated version to 0.1.2
#22
msahraeian
closed
5 years ago
0
remove -march-native
#21
roger-liu-bina
closed
5 years ago
1
Custom dataloader iter
#20
msahraeian
closed
5 years ago
1
ensemble.tsv error
#19
sugyun
closed
5 years ago
3
fix a bug when a region pass the boundry of the ref
#18
roger-liu-bina
closed
5 years ago
2
added chr len limit on positions
#17
msahraeian
closed
5 years ago
2
Bed file from my bam file
#16
sugyun
closed
5 years ago
2
Handle cases where one of the tumor/normal bams misses counts
#15
msahraeian
closed
5 years ago
2
scan_alignments failed! when using "run_test.sh"
#14
joonlee3
closed
5 years ago
5
added docker
#13
msahraeian
closed
5 years ago
3
add max depth opt
#12
roger-liu-bina
closed
5 years ago
3
split_bed.py errors
#11
AllenAkhaumere
closed
5 years ago
2
scan_alignment fails
#10
vendig
closed
5 years ago
55
Seqlib building problem
#9
roger-liu-bina
closed
5 years ago
2
training - input, target not matching
#8
vendig
closed
6 years ago
3
Updated version to 0.1.1
#7
msahraeian
closed
6 years ago
0
Docker pipelines
#6
msahraeian
closed
6 years ago
1
fix mac compilation
#5
roger-liu-bina
closed
6 years ago
3
return error signal when failed
#4
msahraeian
closed
6 years ago
2
added test example, some bug fix
#3
msahraeian
closed
6 years ago
3
Fix readme typo
#2
erjanmx
closed
6 years ago
1
/bin/scan_alignment not found
#1
vendig
closed
6 years ago
4
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