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bioinformatics-core-shared-training
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Bulk_RNAseq_Course_Base
https://bioinformatics-core-shared-training.github.io/Bulk_RNAseq_Course_Base/
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updates to salmon section
#28
tavareshugo
opened
2 months ago
0
Update Salmon index
#27
AshKernow
opened
8 months ago
0
Add patchwork to Visualisations session
#26
AshKernow
opened
8 months ago
0
Switch to pheatmap from ComplexHeatmap
#25
AshKernow
opened
8 months ago
0
Add back tx2gene tsv instructions
#24
AbbiEdwards
closed
8 months ago
1
GSEA fixes to gene ranking and exercise 2
#23
tavareshugo
closed
1 year ago
1
Error writing files - no results folder
#22
tavareshugo
closed
1 year ago
1
Add back tx2gene file creation
#21
AbbiEdwards
opened
1 year ago
0
timing of exploratory analysis (day 1)
#20
tavareshugo
opened
1 year ago
1
Reference group "MUT"
#19
joowkim
closed
1 year ago
1
GSEA: update to mouse halmark genes
#18
tavareshugo
opened
1 year ago
2
Recap presentation to close the course
#17
tavareshugo
opened
1 year ago
0
Extended exercise at the end
#16
tavareshugo
opened
1 year ago
0
Cheatsheet for Unix and explanation of command docs
#15
tavareshugo
opened
1 year ago
0
LRT vs Wald tests
#14
tavareshugo
opened
2 years ago
1
Create `salmon_outputs` directory in Data Exploration
#13
tavareshugo
opened
2 years ago
1
Renaming the log2fc column
#12
TomSmithCGAT
closed
1 year ago
0
Packages for annotations
#11
TomSmithCGAT
opened
2 years ago
1
Too much focus on transformation in the RNA-Seq exploration section
#10
TomSmithCGAT
opened
2 years ago
4
Clarify role of genome alignments
#9
TomSmithCGAT
closed
8 months ago
2
add section with software installation instructions
#8
tavareshugo
opened
2 years ago
0
removes %>% explanation and uses file.path in place of str_c
#7
TomSmithCGAT
closed
2 years ago
1
Avoiding filepath issues
#6
TomSmithCGAT
closed
2 years ago
0
Introductory slides for Day 1 Illumina sequencing- basic concept is wrong
#5
Sankarinam10san
opened
2 years ago
0
Shorten/improve day 3 recap slides (before DESeq2 differential analysis)
#4
tavareshugo
closed
8 months ago
1
Reducing or removing HISAT2 section
#3
tavareshugo
closed
1 year ago
0
Improvements to new stats and linear models sessions
#2
tavareshugo
closed
8 months ago
3
Alignment QC Exercise 2.3 typos
#1
AshKernow
closed
3 years ago
0