NARFMAP is a fork of the Dragen mapper/aligner Open Source Software.
Coming Soon™️
curl --proto '=https' --tlsv1.2 -sSf -L https://install.determinate.systems/nix | sh -s -- install
nix build
We're still using the previous build system under the hood
Compilation was tested on CentOS 7
The basic procedure is
make
Binary will be generated in ./build/release/
Then optionally, to install to /usr/bin/
make install
By default make will compile and launch unit tests. To disable unit tests, use HAS_GTEST=0, e.g. :
HAS_GTEST=0 make
To compile with unit tests, if google test was installed in user space, it might be required to set GTEST_ROOT and LD_LIBRARY_PATH to where gtest was installed, e.g. :
export GTEST_ROOT=/home/username/lib/gtest
export LD_LIBRARY_PATH=/home/username/lib/gtest/lib
We are accepting pull requests into this repository at this time! For any bug report / recommendation / feature request, please open an issue. Stay tuned for a CONTRIBUTING.md