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biolink
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kgx
KGX is a Python library for exchanging Knowledge Graphs
https://kgx.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Update KGX code to process new `merge.yaml` design
#500
hrshdhgd
opened
1 month ago
0
Updated versions of packages
#499
hrshdhgd
closed
1 month ago
0
Update neo4j dependency version
#498
hrshdhgd
closed
1 month ago
0
Bump setuptools from 69.0.2 to 70.0.0
#497
dependabot[bot]
closed
1 month ago
0
Bump zipp from 3.17.0 to 3.19.1
#496
dependabot[bot]
closed
2 months ago
0
Bump certifi from 2023.11.17 to 2024.7.4
#495
dependabot[bot]
closed
2 months ago
0
Bump urllib3 from 2.1.0 to 2.2.2
#494
dependabot[bot]
closed
2 months ago
0
Bump requests from 2.31.0 to 2.32.0
#493
dependabot[bot]
opened
3 months ago
0
Bump jinja2 from 3.1.3 to 3.1.4
#492
dependabot[bot]
opened
4 months ago
0
Make more distinction between source and sink options when parsing CLI input
#491
caufieldjh
opened
5 months ago
0
add "parquet source" mapped to "GraphSource" to support parquet sink support
#490
sierra-moxon
closed
5 months ago
6
update bmt to 1.4.0
#489
sierra-moxon
closed
5 months ago
0
Fixing KGX to support testing knowledge_level and agent_type
#488
sierra-moxon
closed
5 months ago
0
Bump idna from 3.6 to 3.7
#487
dependabot[bot]
closed
5 months ago
0
upgrade bmt to 1.3.0
#486
sierra-moxon
closed
5 months ago
0
update linkml, linkml-runtime, bmt, tests to take advantage of newer biolink model
#485
sierra-moxon
closed
5 months ago
0
Provide source or sink as Parquet
#484
caufieldjh
closed
5 months ago
0
Add Parquet sink support
#483
caufieldjh
closed
5 months ago
3
Support duckdb as alternate sink/source...or more
#482
caufieldjh
opened
5 months ago
2
KGX support for additional formats
#481
realmarcin
opened
5 months ago
0
Updating `jsonlines` dependecy version.
#480
hrshdhgd
closed
5 months ago
1
Updating tox version
#479
hrshdhgd
closed
6 months ago
1
Update links to biolink model docs in kgx-format.md
#478
deepakunni3
closed
7 months ago
0
Bump jinja2 from 3.1.2 to 3.1.3
#477
dependabot[bot]
closed
8 months ago
0
Update tox for biolink-model compatibility
#476
glass-ships
closed
9 months ago
0
Issue#470 - fix propagation of 'deprecate' metadata flag
#475
RichardBruskiewich
closed
10 months ago
1
tweak-gitignore
#474
RichardBruskiewich
closed
10 months ago
0
fix auto-assignment of category
#473
sierra-moxon
closed
10 months ago
0
Replace `prefixcommons` usages with `curies`
#472
cthoyt
opened
10 months ago
0
Undocumented requirements for input nodes/edges file names?
#471
amykglen
opened
10 months ago
0
Obsolete/Deprecated property is not populated when converting from obojson
#470
kevinschaper
closed
10 months ago
15
Bump certifi from 2023.5.7 to 2023.7.22
#469
dependabot[bot]
closed
10 months ago
0
update sparqlwrapper
#468
sierra-moxon
closed
10 months ago
0
Bump urllib3 from 2.0.3 to 2.0.7
#467
dependabot[bot]
closed
10 months ago
0
kgx-format.md: TOC links and JSON Lines consistency
#466
dhimmel
closed
11 months ago
0
Bump urllib3 from 2.0.3 to 2.0.6
#465
dependabot[bot]
closed
11 months ago
1
Changed `networkx` and `rdflib` dependency to version = `*`
#464
hrshdhgd
closed
1 year ago
0
KGX merge overwrites "provided_by" property
#463
stimon
opened
1 year ago
0
Ran poetry update for pandas
#462
hrshdhgd
closed
1 year ago
0
Relax KGX's `pandas` version dependency.
#461
hrshdhgd
closed
1 year ago
0
update to bmt 1.1.0
#460
sierra-moxon
closed
1 year ago
0
Update kgx-format.md - typo fix
#459
caufieldjh
closed
1 year ago
0
update KGX to optionally provide "retrieval_source_ids" attribute to collect information retrieval properties
#458
sierra-moxon
opened
1 year ago
0
Remove unused closurizer dependency
#457
kevinschaper
closed
1 year ago
0
update bmt dependency
#456
sierra-moxon
closed
1 year ago
0
Bump requests from 2.28.2 to 2.31.0
#455
dependabot[bot]
closed
1 year ago
0
Bump pymdown-extensions from 9.11 to 10.0
#454
dependabot[bot]
closed
1 year ago
1
add examples to readme of running key functionality from command line
#453
sierra-moxon
closed
1 year ago
0
update bmt
#452
sierra-moxon
closed
1 year ago
0
add test for CPATH
#451
sierra-moxon
closed
1 year ago
0
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