Go site 1453 gpad 2 parser

biolink / ontobio

python library for working with ontologies and ontology associations

https://ontobio.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

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Go site 1453 gpad 2 parser #484

Closed dougli1sqrd closed 3 years ago

dougli1sqrd commented 3 years ago

For partial fulfillment of https://github.com/geneontology/go-site/issues/1453

kltm commented 3 years ago

I took a look and it seems to be about what I might expect. Is there an emitter associated with this?

dougli1sqrd commented 3 years ago

Yeah, I think in master we have an emitter currently, but again, nothing is "hooked up" to the outside world. But this lets us make a command line tool or modify existing tools.

Can you clarify more on your "non MGI test set" comment? Included in this PR are unit tests of small scale functionality, but probably modifying/creating command line parsing tools that can do gpad 2 in and out maybe in a small pipeline might be a better test?