search

biolink / ontobio

python library for working with ontologies and ontology associations
https://ontobio.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
119 stars 30 forks source link
bioinformatics gene-ontology graph obo obofoundry ontology ontology-tools python rdf semantic-web sparql

readme

|PyPI|

ontobio - a python API for working with ontologies and associations

This module provides objects and utility methods for working with ontologies and associations of entities (genes, variants, etc) to ontology classes.

The ontologies and associations can either be local files or provided by remote services (currently the OntoBee SPARQL service for ontologies and a Monarch or GO Golr service for associations).

Documentation

Documentation is on readthedocs <https://ontobio.readthedocs.io>__

Notebooks

See the Jupyter Notebooks <http://nbviewer.jupyter.org/github/biolink/ontobio/tree/master/notebooks/>__ for code examples

Mailing list

.. |PyPI| image:: https://img.shields.io/pypi/v/ontobio.svg :target: https://pypi.python.org/pypi/ontobio