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**Submitting author:** @Alexhb02 (Alexander Harding Bradley)
**Repository:** https://github.com/cwru-sdle/FAIRmaterials
**Branch with paper.md** (empty if default branch): main
**Version:** 0.4.2.2
**…
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This is the current implementation of writing metadata in JSON format for ingest into HuBMAP infrastructure:
```python
def extract_metadata_write_json(mdata: mudata.MuData, output_json: Path):
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The instructions of how to refer to ontology terms (https://github.com/nfdi4plants/ARC-specification/blob/main/ISA-XLSX.md#ontology-annotations) seem to disagree between the description text, use "\:\…
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```
2024-08-16 14:35:54,553 ERROR cli unexpected exception: Traceback (most recent call last):
File "/usr/local/lib/python3.9/site-packages/odabot/cli.py", line 868, in make_galaxy_tools
to_…
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The EDAM ontology (https://edamontology.org) is a well established set of of ontology keywords for use in bioinformatics.
It would be great to have EDAM identifiers associated with channel inputs a…
ewels updated
2 months ago
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Applies to both v13 and v14 migration scripts: they do not handle use of the properties in OWL restrictions. For example:
```
[
a owl:Restriction ;
owl:onProperty gist:hasPart ;
ow…
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maybe I don't want permissible values created for all of the very specific sub-classes that are eligible in the dynamic enum definition
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With @hechth @bgruening
The EDAM ontology tools view is a great concept but would be much more useful if the following were addressed:
1. Text-searchable ontologies. Currently I have to scroll th…
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@nicholascar, @fititnt, maybe @gwhigs
The main purpose of longturtle is to facilitate better diffs.
Sorting has a lot to do with stability (diff minimization), so I'll share more experience.
Call…
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Here's a detailed plan to develop advanced ontology management capabilities for TxtAI, leveraging Owlready2 and other relevant libraries:
1. Enhance Owlready2 integration for more sophisticated ont…