requirements.txt requiring networkx 2.2

biolink / ontobio

python library for working with ontologies and ontology associations

https://ontobio.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

120 stars 30 forks source link

requirements.txt requiring networkx 2.2 #506

Closed saramsey closed 3 years ago

saramsey commented 3 years ago

Hi Deepak,

Just an FYI, the requirements.txt file for ontobio (in the master branch) appears to be hard-coded to use networkx 2.2, but that version of networkx is (I think) not compatible with python3.9. It looks like you recently merged in some code changes to update ontobio's usage of networkx; am wondering if you can update the requirements.txt accordingly? Am assuming that it should not be ==2.2 ?

Kindly, Steve & Team Expander Agent

saramsey commented 3 years ago

See the issue we are having with using the current pypi version of ontobio, with python3.9: https://github.com/RTXteam/RTX/issues/1179

saramsey commented 3 years ago

forgot to tag @deepakunni3

deepakunni3 commented 3 years ago

@saramsey Thanks for pointing this out.

We will make a new release of ontobio which will not pin networkx to a fixed version.