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biolink / ontobio

python library for working with ontologies and ontology associations
https://ontobio.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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GAF 2.2 output generates extensions using CURIE for relations instead of underscore labels #521

Closed dougli1sqrd closed 3 years ago

dougli1sqrd commented 3 years ago

example from MGI:

MGI     MGI:1920971     1110017D15Rik   located_in      GO:0048471      MGI:MGI:3794006|PMID:18163442   IDA             C       RIKEN cDNA 1110017D15 gene      Cbe1|Smrp1      protein taxon:10090     20081211        MGI     BFO:0000050(EMAPA:17972),BFO:0000050(CL:0000018)

The BFO:0000050 should be part_of

This is a part of https://github.com/geneontology/go-site/issues/1558

dougli1sqrd commented 3 years ago

This looks fixed in the latest snapshot