increase owlsim limit to accurately rank non phenodigm metrics

biolink / ontobio

python library for working with ontologies and ontology associations

https://ontobio.readthedocs.io/en/latest/

BSD 3-Clause "New" or "Revised" License

118 stars 30 forks source link

increase owlsim limit to accurately rank non phenodigm metrics #560

Closed kshefchek closed 3 years ago

kshefchek commented 3 years ago

Since owlsim only ranks results in order of phenodigm score, we need to increase the limit when using other methods to make sure we're able to rerank accurately. Otherwise, we end up giving different results depending on the limit param, see https://github.com/biolink/biolink-api/issues/374

fixes https://github.com/biolink/biolink-api/issues/374