To move away from relying on gaf-eco-mapping.txt and gaf-eco-mapping-derived.txt we should fetch and parse eco.owl into an Ontology. With the whole ontology, we can compute closures for ECO codes indirectly mapped to a GAF evidence code (e.g. IDA) as well as access GO_REF references for terms (via oboInOwl:hasDbXref).
Example: if evidence type ECO:0001162 in a GoAssociation is being written out to a GAF line, this hierarchy should connect it to IDA as the evidence output value:
dustine32
commented
2 years ago
To move away from relying on gaf-eco-mapping.txt and gaf-eco-mapping-derived.txt we should fetch and parse eco.owl into an
Ontology. With the whole ontology, we can compute closures for ECO codes indirectly mapped to a GAF evidence code (e.g.IDA) as well as accessGO_REFreferences for terms (viaoboInOwl:hasDbXref).Example: if evidence type
ECO:0001162in aGoAssociationis being written out to a GAF line, this hierarchy should connect it toIDAas the evidence output value:Tagging @kltm @cmungall