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BioX-Workflow-Command
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picking up nonspecific extensions
#48
olympus-terminal
opened
5 years ago
0
GATK Cohort Calling Stash Not Working
#47
imtiyazhariyani
opened
6 years ago
4
Glob not working as expected in newest releast
#46
jerowe
opened
6 years ago
0
Add sample sets
#45
jerowe
opened
6 years ago
0
Version 2.3.2 does not follow symbolic links
#44
jerowe
opened
6 years ago
0
yml '>-' causing #TASK and command to be on one line
#43
twaddlac
opened
6 years ago
1
add inspect
#42
jerowe
opened
6 years ago
0
variable declared as itself
#41
jerowe
opened
6 years ago
0
t/test_class_tests.t may fail
#40
eserte
opened
6 years ago
3
Task ends in \
#39
jerowe
opened
6 years ago
0
sample_files not correct when using glob
#38
jerowe
closed
6 years ago
0
meta is putting out blank values for global vars
#37
jerowe
closed
6 years ago
1
Suggest hints for errors
#36
jerowe
closed
6 years ago
0
Exclude samples not applied when in the workflow
#35
jerowe
closed
6 years ago
0
Inform user when biox is run with errors
#34
jerowe
closed
6 years ago
1
Rule metadata doesn't comment out multiline strings
#33
jerowe
closed
6 years ago
1
Add a serialize json method to class
#32
jerowe
closed
6 years ago
0
add ticket/project option to biox
#31
jerowe
closed
6 years ago
0
Strange sample ".biosails" when running biox
#30
nizardrou
closed
7 years ago
1
depends on previous version of itself
#29
chorny
closed
7 years ago
2
Turn off biox_stats when needed
#28
jerowe
closed
7 years ago
0
Port Documentation to BioSAILs website
#27
jerowe
closed
6 years ago
1
Add Template::Mustache as a templating option
#26
jerowe
closed
7 years ago
0
Stash is not working 2.2.1
#25
jerowe
closed
7 years ago
0
Save command line params + config in a configuration file in cache
#24
jerowe
closed
6 years ago
0
Add command line parameters to stashed workflow in .biox-cache/workflows
#23
jerowe
closed
7 years ago
0
2.1.16 Breaks stats
#22
jerowe
closed
7 years ago
2
biox acts weird when find_by_dir: 0 and by_sample_outdir: 1
#21
jerowe
closed
7 years ago
0
Feature to create a new workflow from existing workflows
#20
jerowe
opened
7 years ago
1
Directories are not being created when running biox run
#19
nizardrou
closed
7 years ago
6
biox run --plugins typo
#18
nizardrou
closed
7 years ago
0
Renaming the biox help menu
#17
nizardrou
closed
7 years ago
0
Ability to exclude samples when running a workflow
#16
nizardrou
closed
7 years ago
1
Intermittent error with stats.
#15
jerowe
closed
7 years ago
1
Add ability to change global/local from command line
#14
jerowe
closed
6 years ago
1
Backwards compatible file_rule not being applied
#13
jerowe
closed
7 years ago
0
If HPC is defined in local but not in global it will die
#12
jerowe
closed
7 years ago
0
redefining chrom_list in global throws an error and dies.
#11
jerowe
closed
7 years ago
1
create project table command
#10
jerowe
closed
7 years ago
2
Defining samples in global (or local) doesn't work
#9
jerowe
closed
7 years ago
1
Orphan INPUT/OUTPUT spits out too much data
#8
jerowe
closed
7 years ago
1
local HPC overwrites global HPC
#7
jerowe
closed
7 years ago
0
biox should get the exit code before running biox file_log
#6
jerowe
closed
7 years ago
0
--select_rules has no effect on stats
#5
jerowe
closed
7 years ago
1
INPUT/OUTPUT checks get unitialized value
#4
jerowe
closed
7 years ago
0
Passing a --something_that_is_not_a_command won't cause a failure in biox
#3
nizardrou
closed
7 years ago
1
Samples cannot be found when searching symLinks
#2
nizardrou
closed
7 years ago
2
Feature/docs
#1
jerowe
closed
7 years ago
0