biosimulations / biosimulations-physiome

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
https://docs.biosimulations.org/repositories/physiome
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Switch to download files via .tar.gz export or Git repository #16

Closed jonrkarr closed 2 years ago

jonrkarr commented 2 years ago

Exported COMBINE archives from Physiome, e.g., from https://models.physiomeproject.org/e/43f/download_generated_omex are missing some files.

Example missing files:

jonrkarr commented 2 years ago

These files are present in Physiome. They have to be obtained using either the .tar.gz export or Git repository.

Example exposure 43f

bilalshaikh42 commented 2 years ago

The current code downloads the git repo and packages the omex archive manually