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biosimulations / biosimulations-physiome

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
https://docs.biosimulations.org/repositories/physiome
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cellml combine computational-biology omex physiome-model-repository pmr sed-ml systems-biology

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Continuous integration Test coverage All Contributors

BioSimulations-Physiome

BioSimulations-Physiome provides a command-line application for publishing the Physiome model repository of CellML models to the BioSimulations repository for simulation projects.

This command-line program is run weekly by the GitHub action in this repository.

Installation

Requirements

Install latest revision from GitHub

pip install git+https://github.com/biosimulations/biosimulations-physiome.git#biosimulations-physiome

API documentation

API documentation is available here.

License

This package is released under the MIT license. Physiome is licensed under the Creative Commons Attribution 3.0 Unported License.

Development team

This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York and the Center for Reproducible Biomedical Modeling. Physiome was developed by the Auckland Bioengineering Institute at The University of Auckland, with assistance from the contributors listed here.

Contributing to BioSimulations-Physiome

We enthusiastically welcome contributions to BioSimulations-Physiome! Please see the guide to contributing and the developer's code of conduct.

Acknowledgements

This work was supported by National Institutes of Health award P41EB023912.

Questions and comments

Please contact the BioSimulations Team with any questions or comments about this package. Please contact the Physiome Team with any questions or comments about Physiome.