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biosimulations / biosimulations-physiome

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
https://docs.biosimulations.org/repositories/physiome
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Deal with cases where exposure contains "components" #25

Closed bilalshaikh42 closed 2 years ago

bilalshaikh42 commented 2 years ago

eg https://models.physiomeproject.org/e/7d5

jonrkarr commented 2 years ago

These are imported files. I don't think this requires special handling. I think this should be handled by:

bilalshaikh42 commented 2 years ago

The special handling will be more regarding the metadata parsing/processing of the code. The combine archive should work just the same

On Wed, Jan 5, 2022, 5:56 PM Jonathan Karr @.***> wrote:

These are imported files. I don't think this requires special handling. I think this should be handled by:

  • Clone all submodules
  • Incorporate all cloned files into the COMBINE archive
  • The SED-ML files reference the main CellML files and those files import all of the "component" CellML files

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