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biosimulations / biosimulations-physiome

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
https://docs.biosimulations.org/repositories/physiome
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Investigate e08bd642df06eb59404c8e46afbb04a4 #44

Closed bilalshaikh42 closed 2 years ago

bilalshaikh42 commented 2 years ago 
The task does not describe a valid simulation:

  Error: the model must have at least one ODE or DAE.

https://run.biosimulations.org/runs/624e965ef0f95cc6a52dac8c

jonrkarr commented 2 years ago

This an an error raised by OpenCOR. The CellML could be valid, but use a subset of CellML that OpenCOR doesn't support.

The top of the description of the model says

This model contains no ODEs and as such can not currently be solved by any of the available CellML tools. However the model is known to be valid CellML and the units are consistent. Also the CellML model appears to match the published equations.

jonrkarr commented 2 years ago

Since the Physiome team is aware of this, I think we should simply skip these. The value of publishing a model that can't be simulated seems limited to me. If it can't be simulated, how can we even trust that it was encoded into CellML correctly?