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biosimulations / biosimulations-physiome

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
https://docs.biosimulations.org/repositories/physiome
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Annotate that generated SED-ML files were computationally-generated from CellML files #52

Closed jonrkarr closed 2 years ago

jonrkarr commented 2 years ago

See #10. I'm not sure if this was implemented. isDerivedFrom doesn't appear in a search of the code.

bilalshaikh42 commented 2 years ago

Might not have been pushed at the time https://github.com/biosimulations/biosimulations-physiome/blob/9fdb566d968ccfc66053edbc2b42bb163dd28208/biosimulations_physiome/process_projects.py#L597-L607

jonrkarr commented 2 years ago

This should be added to the predecessors key rather than the other key.

The generated RDF will be similar because the predecessors key is mapped to the same predicate (isDerivedFrom), and BioSimulators-utils will parse it the same (to the predecessors key). To make it easier to understand how the exported metadata will be interpreted, it would be helpful to move this to the predecessors key.