Planning new class

Tentative schedule:

• Week 01

  • [x] Getting started
  • [x] Basic UNIX command line
  • [x] Navigating the file system
  • [x] Cluster architecture (your computer, frontend, nodes, ...)

• Week 02

  • [ ] Getting files and software (conda, scp, rsync, wget, git) -- besides git and wget I don't have a lot of experience here, so research is needed.
  • [x] Editing files
  • [x] Pipelines (stdin/stdout/pipelines)
  • [x] Scripts and variables.

• Week 03

  • [x] BASH programming
  • [ ] Resources--what are the main resources? where should you run jobs? I think these could go to week one or two as well... I don't know. They could also go to week 5 where it becomes relevant.

• Week 04

  • [ ] Reproducible research? (conda etc. for software. Versions of data?)
  • [ ] Regular expressions + grep, sed, and awk?

• Week 05

  • [ ] Queue system (submit, status, log, ...)
  • [ ] Asking for the right resources for the job?

• Week 06

  • [ ] Workflows (gwf)

• Week 07

  • [ ] Project?