bjing2016 alphaflow issues

bjing2016 / alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

MIT License

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issues

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Add CPU support for inference.

#28 jbenjoseph opened 1 week ago
0
predict.py does not run AttributeError: module 'numpy' has no attribute 'object'.

#27 labeln closed 1 week ago
0
when traing alphaflow from scratch, show AttributeError: 'AlphaFoldWrapper' object has no attribute 'extra_msa_stack'

#26 Paulie-ai opened 3 weeks ago
2
The distance between adjacent alpha carbons is not 3.8 A from the Prior

#25 hzk597955516 opened 3 weeks ago
0
Create Dockerfile

#24 maxbates closed 3 weeks ago
1
Training with PDBs

#23 smallfishabc opened 1 month ago
0
Availability of MD Ensemble Evaluation Scripts

#22 v-shaoningli closed 3 weeks ago
2
The size of tensor a (184) must match the size of tensor b (183) at non-singleton dimension 1

#21 cmwilson252 opened 1 month ago
1
fix(inference): wrong variable names in inference script

#20 y1zhou closed 1 month ago
0
missing scripts.prep_atlas.py file

#19 YuX-Ren closed 1 month ago
1
Generating Abnormal PDB results

#18 Aolibaba closed 2 months ago
2
Appropriate `model_config` arguments for initial training upon predicting with long sequence

#17 eunos-1128 opened 2 months ago
2
Command options' help messages in predict.py missing

#16 eunos-1128 opened 3 months ago
1
Update README

#15 eunos-1128 closed 3 months ago
0
Issues with CUDA12 and or G++17

#14 Raul-araya-secchi opened 3 months ago
1
Diffuse selected residues

#13 ntxxt closed 3 months ago
0
feat(predict.py): + args.no_overwrite

#12 jyaacoub closed 3 months ago
0
Dockerfile or CUDA 12

#11 Chokyotager opened 3 months ago
2
PPI ensembles

#10 sacombs opened 3 months ago
2
PDB as input

#9 johnnytam100 opened 3 months ago
0
Installation fails on Cuda12

#8 walee-1 closed 3 months ago
3
scripts.unpack_mmcif.py reference to outdated betafold?

#7 eduardoftoliveira closed 3 months ago
1
Multimer

#6 MaciejMajew closed 4 months ago
2
TypeError: __init__() missing 1 required positional argument: 'no_column_attention'

#5 Bloeci closed 4 months ago
5
Colab notebook

#4 dzyla opened 4 months ago
1
Example Input Files Not Working

#3 jfreeze95 closed 4 months ago
3
TypeError: __init__() missing 2 required positional arguments: 'opm_first' and 'fuse_projection_weights'

#2 BLEACH366 closed 4 months ago
4
Update README.md

#1 eltociear closed 4 months ago
0

bjing2016 / alphaflow

issues

Add CPU support for inference.

predict.py does not run AttributeError: module 'numpy' has no attribute 'object'.

when traing alphaflow from scratch, show AttributeError: 'AlphaFoldWrapper' object has no attribute 'extra_msa_stack'

The distance between adjacent alpha carbons is not 3.8 A from the Prior

Create Dockerfile

Training with PDBs

Availability of MD Ensemble Evaluation Scripts

The size of tensor a (184) must match the size of tensor b (183) at non-singleton dimension 1

fix(inference): wrong variable names in inference script

missing scripts.prep_atlas.py file

Generating Abnormal PDB results

Appropriate `model_config` arguments for initial training upon predicting with long sequence

Command options' help messages in predict.py missing

Update README

Issues with CUDA12 and or G++17

Diffuse selected residues

feat(predict.py): + args.no_overwrite

Dockerfile or CUDA 12

PPI ensembles

PDB as input

Installation fails on Cuda12

scripts.unpack_mmcif.py reference to outdated betafold?

Multimer

TypeError: init() missing 1 required positional argument: 'no_column_attention'

Colab notebook

Example Input Files Not Working

TypeError: init() missing 2 required positional arguments: 'opm_first' and 'fuse_projection_weights'

Update README.md