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bjpop
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rubra
Infrastructure code to support DNA pipeline
MIT License
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Rubra RedDog error
#28
vealvarez
opened
5 years ago
1
Trouble install directly from pip
#27
burkesquires
closed
7 years ago
1
See - https://github.com/TBBSS/rubra/blob/master/TBBSS.rst
#26
mscook
opened
9 years ago
0
Moved drmaa import to local scope.
#25
nuwang
opened
9 years ago
0
example doesn't run out of the box
#24
AMChalkie
opened
10 years ago
1
handling of full paths in command line
#23
AMChalkie
opened
10 years ago
0
Make rubra more robust in the face of job errors
#22
bjpop
opened
10 years ago
0
Use shlex.split to parse srun command line
#21
bjpop
opened
10 years ago
0
Generate other image format types for flowchart
#20
bjpop
opened
11 years ago
0
save a separate shell script for each submitted job
#19
bjpop
opened
11 years ago
0
Allow config file to be in different directory to pipeline file
#18
bjpop
opened
11 years ago
0
Support SLURM job scheduler
#17
bjpop
opened
11 years ago
2
Allow module loading for non-distributed jobs
#16
claresloggett
closed
11 years ago
1
Putting too many steps out of order results in an error that is not usually seen in Ruffus
#15
claresloggett
opened
11 years ago
0
Add an example pipeline that makes use of the config files
#14
claresloggett
opened
11 years ago
0
Modules in the pipeline script's directory can't be imported when it is called via rubra
#13
claresloggett
closed
11 years ago
1
Make the pipeline a required argument and remove the --pipeline flag
#12
bjpop
closed
11 years ago
1
Fix **kw passing and remove queue name based switch
#11
genomematt
closed
11 years ago
2
refactor cluster_job
#10
genomematt
closed
11 years ago
0
The default of rebuild appears to actually be fromstart (which I would expect) ? But docs say it is fromend.
#9
claresloggett
closed
11 years ago
1
Add touchfiles as an option alongside print, run, flowchart
#8
claresloggett
closed
11 years ago
2
Make the installed rubra package executable as a script from the user's path
#7
claresloggett
closed
11 years ago
2
package for pip install
#6
genomematt
closed
11 years ago
0
Investigate the use of DRMAA to submit jobs to clusters.
#5
bjpop
opened
11 years ago
2
Make Rubra an installable package in the normal Python way.
#4
bjpop
closed
11 years ago
1
Give Rubra a version number
#3
bjpop
closed
11 years ago
2
Perform checking of configuration options
#2
bjpop
opened
11 years ago
0
Clare's changes
#1
claresloggett
closed
12 years ago
0