bjpop rubra issues - Githubissues

bjpop / rubra

Infrastructure code to support DNA pipeline

MIT License

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issues

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Rubra RedDog error

#28 vealvarez opened 5 years ago
1
Trouble install directly from pip

#27 burkesquires closed 7 years ago
1
See - https://github.com/TBBSS/rubra/blob/master/TBBSS.rst

#26 mscook opened 9 years ago
0
Moved drmaa import to local scope.

#25 nuwang opened 9 years ago
0
example doesn't run out of the box

#24 AMChalkie opened 10 years ago
1
handling of full paths in command line

#23 AMChalkie opened 10 years ago
0
Make rubra more robust in the face of job errors

#22 bjpop opened 10 years ago
0
Use shlex.split to parse srun command line

#21 bjpop opened 10 years ago
0
Generate other image format types for flowchart

#20 bjpop opened 11 years ago
0
save a separate shell script for each submitted job

#19 bjpop opened 11 years ago
0
Allow config file to be in different directory to pipeline file

#18 bjpop opened 11 years ago
0
Support SLURM job scheduler

#17 bjpop opened 11 years ago
2
Allow module loading for non-distributed jobs

#16 claresloggett closed 11 years ago
1
Putting too many steps out of order results in an error that is not usually seen in Ruffus

#15 claresloggett opened 11 years ago
0
Add an example pipeline that makes use of the config files

#14 claresloggett opened 11 years ago
0
Modules in the pipeline script's directory can't be imported when it is called via rubra

#13 claresloggett closed 11 years ago
1
Make the pipeline a required argument and remove the --pipeline flag

#12 bjpop closed 11 years ago
1
Fix **kw passing and remove queue name based switch

#11 genomematt closed 11 years ago
2
refactor cluster_job

#10 genomematt closed 11 years ago
0
The default of rebuild appears to actually be fromstart (which I would expect) ? But docs say it is fromend.

#9 claresloggett closed 11 years ago
1
Add touchfiles as an option alongside print, run, flowchart

#8 claresloggett closed 11 years ago
2
Make the installed rubra package executable as a script from the user's path

#7 claresloggett closed 11 years ago
2
package for pip install

#6 genomematt closed 11 years ago
0
Investigate the use of DRMAA to submit jobs to clusters.

#5 bjpop opened 11 years ago
2
Make Rubra an installable package in the normal Python way.

#4 bjpop closed 11 years ago
1
Give Rubra a version number

#3 bjpop closed 11 years ago
2
Perform checking of configuration options

#2 bjpop opened 11 years ago
0
Clare's changes

#1 claresloggett closed 12 years ago
0