blachlylab dhtslib issues

blachlylab / dhtslib

D bindings and OOP wrappers for htslib

MIT License

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issues

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Segfault in certain situations involving cigar

#40 charlesgregory closed 3 years ago
7
added support for mingw windows build

#39 charlesgregory closed 4 years ago
0
Windows compatibility

#38 charlesgregory opened 4 years ago
7
Highlight that bindings were hand-generated

#37 jblachly closed 4 years ago
0
cigar.d is_null implementation incorrect?

#36 charlesgregory closed 4 years ago
2
htslib 1.10 compatibility

#35 jblachly closed 3 years ago
18
bug in vcf.d

#34 jblachly closed 4 years ago
0
tagvalue null pointer

#33 jblachly opened 5 years ago
8
SAM Tags

#32 jblachly closed 4 years ago
4
Reorganization: dhtslib.htslib to top level module

#31 jblachly closed 4 years ago
1
Publicly imported hFILE

#30 charlesgregory closed 5 years ago
4
Is VCFReader too slow?

#29 jblachly closed 4 years ago
2
Bgzf reader

#28 charlesgregory closed 3 years ago
4
Edit bam data

#27 charlesgregory closed 5 years ago
0
added samwriter struct

#26 charlesgregory closed 5 years ago
3
BGZFile range implementation does not conform to Phobos range rules

#25 charlesgregory closed 3 years ago
0
VCFReader range interface segfault if file not open

#24 jblachly closed 5 years ago
1
VCFReader should expose MAX_UNPACK

#23 jblachly closed 5 years ago
0
VCFReader, VCFWriter need to support stdin, stdout

#22 jblachly closed 4 years ago
1
Documentation: source level

#21 jblachly opened 5 years ago
1
camelCase vs snake_case

#20 jblachly closed 4 years ago
2
Bug fixes, Cigar Ops, and bam1_core_t getters/setters

#19 jblachly closed 5 years ago
0
SAMWriter needed

#18 charlesgregory closed 4 years ago
3
Convenience functions needed for SAMRecord

#17 charlesgregory closed 5 years ago
2
Make missing index warning suppressible

#16 kautto closed 5 years ago
1
unit testing interferes with software using dhtslib

#15 jblachly closed 5 years ago
2
deprecation warning

#14 jblachly closed 5 years ago
0
SAMRecord sequence could be rev comp'd

#13 charlesgregory closed 5 years ago
3
Need CRAM support

#12 jblachly closed 4 years ago
1
Invalid negative number of threads

#11 jblachly closed 5 years ago
0
Need VCFReader

#10 jblachly closed 5 years ago
2
Test files needed

#9 charlesgregory closed 4 years ago
3
Expose pileup in dhtslib.sam.SAMFile

#8 jblachly opened 5 years ago
1
overload opIndex for SAMFile (and others) as de facto query

#7 jblachly closed 5 years ago
4
hts_log color on Windows?

#6 jblachly closed 5 years ago
1
hts_open doesn't create BGZF pointer in htsFile

#5 charlesgregory closed 5 years ago
1
typedef'd functions returning pointers are wrong

#4 jblachly closed 5 years ago
1
version is reserved keyword; use linkage demangling

#3 jblachly closed 5 years ago
1
Adjust function prototypes with static arrays to include ref

#2 jblachly closed 6 years ago
1
TabixIndexedFile double dtor

#1 charlesgregory closed 6 years ago
1