issues
search
blachlylab
/
dhtslib
D bindings and OOP wrappers for htslib
MIT License
7
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
htslib 1.13 compatibility
#90
charlesgregory
closed
3 years ago
8
hts_log terminal colors no longer working
#89
charlesgregory
closed
3 years ago
6
Coordinate system improvements
#88
charlesgregory
closed
3 years ago
7
apt-get update github actions
#87
jblachly
closed
3 years ago
0
htslib 1.13 compatibility
#86
charlesgregory
closed
3 years ago
1
Coordinates ctor for two coordinate isn't used
#85
charlesgregory
closed
3 years ago
4
Remove GC allocation from coloration of log messages
#84
thewilsonator
closed
3 years ago
1
Fix typo in readme
#83
thewilsonator
closed
3 years ago
0
Coordinate/Coordinates improvements
#82
charlesgregory
closed
3 years ago
3
Rework coordinate shortcuts
#81
charlesgregory
closed
3 years ago
2
Other file formats
#80
charlesgregory
closed
3 years ago
3
htslib 1.12 compatibility
#79
charlesgregory
closed
3 years ago
2
htslib 1.12 full compatibility
#78
charlesgregory
closed
3 years ago
0
Allow VCFWriter to accept output file type like SAMWriter
#77
charlesgregory
closed
3 years ago
0
Allow TabixIndexedFile to be converted to other Readers
#76
charlesgregory
closed
3 years ago
0
Implement opDollar for faidx
#75
charlesgregory
closed
3 years ago
0
Unittests for all Ranges
#74
charlesgregory
closed
3 years ago
1
TabixIndexedFile needs reference counting
#73
charlesgregory
closed
3 years ago
1
Incorrect bcf_hrec_set_val binding
#72
charlesgregory
closed
3 years ago
0
CoordinateSystem Implementation and Adoption
#71
charlesgregory
closed
3 years ago
14
v0.12.2 seems to be incompatible with parallel foreach
#70
charlesgregory
closed
3 years ago
4
VCFReader doesn't conform to Range rules
#69
charlesgregory
closed
3 years ago
2
Other file formats not directly supported by htslib
#68
charlesgregory
closed
3 years ago
2
Documentation: HTML output and github pages/hosted
#67
jblachly
opened
3 years ago
4
RC TagValue
#66
charlesgregory
closed
3 years ago
1
Areas for performance improvement
#65
charlesgregory
opened
3 years ago
2
htslib 1.11 full compatibility
#64
charlesgregory
closed
3 years ago
0
Split dhtslib/sam/package.d
#63
charlesgregory
closed
3 years ago
2
SAMReader/SAMWriter should store and use SAMHeader
#62
charlesgregory
closed
3 years ago
5
Unittests of .sam files cannot call allRecords
#61
jblachly
closed
3 years ago
1
Separate unit tests and integration tests
#60
jblachly
opened
3 years ago
2
AllRecordsRange misses first record
#59
jblachly
closed
3 years ago
9
Cigar and md changes
#58
charlesgregory
closed
3 years ago
6
Should SAMRecord and VCFRecord be struct (currently class)?
#57
jblachly
closed
3 years ago
4
Centralized (compiler) warnings
#56
charlesgregory
opened
3 years ago
0
Typesafe coordinate systems
#55
jblachly
closed
3 years ago
6
htslib submodule is out of date
#54
charlesgregory
closed
3 years ago
4
changes to qscore functions
#53
charlesgregory
closed
4 years ago
3
SAMRecord.qscores setter and getter have different Phred defaults
#52
jblachly
closed
4 years ago
2
cigar_and_md_api
#51
jblachly
closed
4 years ago
2
Initial support for SAMReader["chrWHATEVA", x .. $]
#50
jblachly
closed
4 years ago
0
SAMReader.query string overloads are 1-based not 0-based
#49
charlesgregory
closed
4 years ago
2
Move dhtslib.cigar under dhtslib.sam
#48
charlesgregory
closed
3 years ago
1
dmd can't inline SAMRecord.pos
#47
charlesgregory
closed
4 years ago
3
linker looking for kputuw for kstring.d
#46
charlesgregory
closed
4 years ago
2
SAMRecord needs string reference name!
#45
jblachly
closed
4 years ago
4
Make Cigar iterable
#44
jblachly
closed
4 years ago
4
SAMReader.query alias to fetch
#43
jblachly
closed
4 years ago
0
High-level wrappers for SAM header API
#42
charlesgregory
closed
4 years ago
2
Eliminate sourceLibrary from dubfile
#41
jblachly
closed
4 years ago
1
Previous
Next