bmeg bmeg-etl issues - Githubissues

bmeg / bmeg-etl

ETL configuration for BMEG

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Duplicate Publications http versus https in URL

#306 adamstruck closed 5 years ago
0
Some G2P HasSupportingReference edge To ids contain whitespace

#305 adamstruck closed 5 years ago
0
CNA values are strings

#304 kellrott closed 5 years ago
0
exclude Deadletter vertices in BMEG manifest

#303 adamstruck closed 5 years ago
0
Normalize top level attributes for Case/Sample/Aliquot

#302 kellrott opened 5 years ago
0
MSigDB

#301 kellrott closed 5 years ago
1
Edge Connecting drug response studies to profiled drugs

#300 kellrott closed 5 years ago
1
Add Program vertex; ccle/ctrp/gdsc each have their own program and projects

#299 adamstruck closed 5 years ago
3
added util to summarize check graph output by missing vertex labels

#298 adamstruck closed 5 years ago
0
Adds edge between Aliquot and File

#297 bwalsh closed 5 years ago
0
CCLE: fix Aliquot gid ResponseIn edges

#296 adamstruck closed 5 years ago
0
remove outputs.ensembl.missing_transcripts.dvc

#295 adamstruck closed 5 years ago
1
Need to dedup Publication vertices

#294 adamstruck closed 5 years ago
0
Ensembl proteins new source

#293 adamstruck closed 5 years ago
0
PubMed Build

#292 kellrott closed 5 years ago
2
emit and normalize CTRP compounds

#291 adamstruck closed 5 years ago
0
Pathway Commons Import

#290 kellrott closed 5 years ago
1
ccle maf transform fix for missing aliquots

#289 adamstruck closed 5 years ago
0
Minor fixes

#288 adamstruck closed 5 years ago
0
ran ccle tatlow expression transform and ran go transform

#287 adamstruck closed 5 years ago
0
file manifest generation script

#286 adamstruck closed 5 years ago
0
Missing DVC entry for source/ensembl/missing_transcript_ids.txt

#285 adamstruck closed 5 years ago
3
Test load of current dataset and current GRIP

#284 kellrott closed 5 years ago
0
Send email about getting help on RPPA antibody mapping

#283 kellrott closed 5 years ago
2
Run bloom filter link checker on output files on RC3

#282 kellrott closed 5 years ago
1
Revisit integrations tests

#281 kellrott closed 5 years ago
2
reran methylation transform

#280 adamstruck closed 5 years ago
0
Reworking Drug Response Importers

#279 kellrott closed 5 years ago
1
Removing unused CWL code

#278 adamstruck closed 5 years ago
0
Redundant Drug Response Structures

#277 kellrott closed 5 years ago
2
check all files exist before loading

#276 adamstruck closed 5 years ago
0
Vep merge

#275 bwalsh closed 5 years ago
2
CCLE VEP

#274 kellrott closed 5 years ago
0
TCGA gene expression

#273 kellrott closed 5 years ago
0
Fixed DVC entry for CNA transform

#272 adamstruck closed 5 years ago
0
json emitter gzip header

#271 bwalsh closed 5 years ago
1
Ensembl fix

#270 kellrott closed 5 years ago
0
ceph - point config at ceph server

#269 bwalsh closed 5 years ago
0
Ensembl GTF parser

#268 kellrott closed 5 years ago
1
Removing 'Gene:', 'Exon:', 'Transcript:' prefix from vertex gids

#267 kellrott closed 5 years ago
2
Gene, Transcript, Exons should not have a prefix beyond ENS[GTE]00...

#266 kellrott closed 5 years ago
2
Refactor CCLE transform to use MC3 MAF transform code

#265 kellrott closed 5 years ago
1
Document VEP CWL step used on CCLE MAFs

#264 kellrott closed 5 years ago
1
Get DVC running on Ceph

#263 kellrott closed 5 years ago
1
README Update

#262 kellrott closed 1 year ago
0
Change Allele --(AlleleCall) -> Callset edge direction

#261 kellrott closed 5 years ago
1
Lower case edge labels

#260 kellrott closed 5 years ago
2
fix for cna transformer

#259 adamstruck closed 5 years ago
0
generated ensembl-protein dvc files

#258 adamstruck closed 5 years ago
0
No DVC entry for ensembl-protein transformer outputs

#257 adamstruck closed 5 years ago
0

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