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bmeg-etl
ETL configuration for BMEG
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CCLE copy number data
#356
adamstruck
opened
5 years ago
0
Adds pharmgkb.org clinical annotations
#355
bwalsh
closed
11 months ago
1
Import pharmacodb
#354
adamstruck
closed
5 years ago
1
removing redundant information from msigdb
#353
adamstruck
closed
5 years ago
1
Database of curated mutations (DoCM)
#352
adamstruck
opened
5 years ago
0
GWAS Catalog
#351
adamstruck
opened
5 years ago
0
PRISM
#350
adamstruck
opened
5 years ago
0
pathway commons: use PathwayCommons11.All.BIOPAX.owl.gz
#349
adamstruck
closed
5 years ago
0
Remove duplicate associations from DGIdb
#348
adamstruck
closed
5 years ago
0
drug_enricher: search pubchem first
#347
adamstruck
closed
5 years ago
1
RC3 CTRP patch
#346
adamstruck
closed
5 years ago
0
Cell lines case vertices missing properties
#345
adamstruck
closed
5 years ago
0
generate-schema utility
#344
adamstruck
closed
5 years ago
1
add mondo transform; add gdc phenotypes; update phenotype enricher
#343
adamstruck
closed
5 years ago
2
Better way to filter tumor sample/aliquot
#342
kellrott
closed
1 year ago
0
Add DGIdb data; update compound normalizer
#341
adamstruck
closed
5 years ago
1
Added Msigdb / Pathway Commons
#340
adamstruck
closed
5 years ago
1
CDA prototypes
#339
bwalsh
closed
5 years ago
1
DGIdb
#338
kellrott
closed
5 years ago
1
PharmGKB
#337
kellrott
opened
5 years ago
0
DisGeNET
#336
kellrott
opened
5 years ago
0
update vertex counts
#335
bwalsh
closed
5 years ago
0
transformation scripts should be listed as dependencies in DVC files
#334
adamstruck
closed
5 years ago
1
V([big_list]) produces no results ?
#333
bwalsh
closed
5 years ago
3
Use Gen3 schemas in transforms
#332
adamstruck
closed
5 years ago
3
Gen3 schema
#331
bwalsh
closed
5 years ago
4
adjust ratify expected counts
#330
bwalsh
closed
5 years ago
0
Gen3
#329
kellrott
closed
5 years ago
0
Create README.md for integration tests
#328
bwalsh
closed
5 years ago
0
duplicates in GeneOntologyAnnotation.Edge.json
#327
bwalsh
closed
1 year ago
3
Harmonize DrugResponse data for CCLE/CTRP/GDSC
#326
adamstruck
closed
5 years ago
1
GDSC / CTRP fix ActArea
#325
adamstruck
closed
5 years ago
0
Reworking cellline Case / Sample / Aliquot relationships
#324
adamstruck
closed
5 years ago
9
G2p v12
#323
bwalsh
closed
5 years ago
2
Gen3
#322
kellrott
closed
5 years ago
2
Edge refactor
#321
kellrott
closed
5 years ago
1
Duplicate alleles?
#320
kellrott
closed
4 years ago
3
upgrade dvc
#319
bwalsh
closed
5 years ago
1
Reverse edge direction between Program/Project/Case/Sample/Aliquot
#318
adamstruck
closed
5 years ago
3
Standardize on edge naming conventions
#317
adamstruck
closed
5 years ago
2
Create Diagnosis Vertex
#316
adamstruck
closed
1 year ago
2
CCLE/CTRP/GDSC: Samples/Aliquots should be program specific
#315
adamstruck
closed
5 years ago
0
CCLE/CTRP/GDSC/GTeX: Link Projects to Samples
#314
adamstruck
closed
5 years ago
0
adds back in CTRP TestedIn edges
#313
adamstruck
closed
5 years ago
1
G2p v12 + 'TestedIn' edge from compound to project
#312
bwalsh
closed
5 years ago
0
cna values should be ints not strings
#311
adamstruck
closed
5 years ago
0
Publication dedup
#310
adamstruck
closed
5 years ago
0
updates-integration-tests
#309
bwalsh
closed
5 years ago
0
Adding in 'TestedIn' edge from compound to project
#308
kellrott
closed
5 years ago
0
improves test integrity by updating cache
#307
bwalsh
closed
5 years ago
0
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