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bmeg
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bmeg-etl
ETL configuration for BMEG
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Fix/regex match
#406
matthewpeterkort
closed
1 month ago
0
medication code -> snomed
#405
teslajoy
opened
1 month ago
0
Distance calc w funnel
#404
teslajoy
opened
2 months ago
0
FHIR mint-ids
#403
teslajoy
opened
4 months ago
0
pharmacodb transform
#402
teslajoy
closed
1 month ago
0
chembl tranfsorm and dist
#401
teslajoy
closed
1 month ago
2
updated schema - closes #391
#400
teslajoy
closed
6 months ago
0
chembl update
#399
teslajoy
closed
6 months ago
0
Adds susbstance Definition
#398
teslajoy
closed
6 months ago
0
csv tableload
#397
teslajoy
opened
6 months ago
0
Library call (or user defined env libraries) in sifter config pipeline's map
#396
teslajoy
closed
6 months ago
0
gtex
#395
teslajoy
closed
6 months ago
2
Adds susbstance Definition
#394
teslajoy
closed
7 months ago
0
coderdata
#393
teslajoy
opened
7 months ago
1
cellosaurus transform plan
#392
teslajoy
closed
1 month ago
2
Add schema to repo
#391
teslajoy
closed
6 months ago
1
[WIP] fhirizer updates
#390
kellrott
closed
7 months ago
1
Feature/normalize schema -- Adds transformed schemas
#389
matthewpeterkort
closed
8 months ago
0
initial gdc2fhir transform plan
#388
teslajoy
closed
6 months ago
3
updated vertices description
#387
teslajoy
closed
8 months ago
1
Update BMEG schema descriptions to be a bit more descriptive
#386
matthewpeterkort
closed
6 months ago
1
Lift Schema Rc6 + FHIR
#385
bwalsh
opened
10 months ago
3
GDC -> FHIR
#384
bwalsh
closed
6 months ago
1
Pharamcodb cwl
#383
kellrott
closed
11 months ago
0
Rc7-PharmacoGx: Docker image and CHEMBL id's
#382
evergreen700
closed
1 year ago
1
GDC Script update
#381
kellrott
closed
1 year ago
0
Prep update
#380
kellrott
closed
1 year ago
0
Fixed the ensembl transcript gene_id and msigdb geneSet publication
#379
evergreen700
closed
1 year ago
5
Schema update
#378
kellrott
closed
1 year ago
0
Map TCGA and CCLE samples to common ontology
#377
kellrott
opened
1 year ago
1
PFAM review
#376
jordan2lee
opened
1 year ago
0
G2P liftover to GRCh38
#375
jordan2lee
opened
1 year ago
0
GDSC Gene Expression Data
#374
jordan2lee
opened
1 year ago
0
Cleaning up cell line / drug response build
#373
kellrott
closed
1 month ago
0
Compounds
#372
jordan2lee
closed
11 months ago
0
RC7
#371
kellrott
opened
1 year ago
0
Rc6
#370
kellrott
closed
2 years ago
0
Allele Refactoring [HG38 liftover, VariantRepresentation, g2p v2.0, Parse more VEP fields]
#369
bwalsh
opened
3 years ago
0
Drugbank interacts
#368
jordan2lee
closed
2 years ago
0
Snakemake
#367
kellrott
closed
3 years ago
0
PRISM import
#366
adamstruck
closed
1 year ago
0
Adds extract for wiki
#365
bwalsh
opened
4 years ago
0
GTEX update
#364
kellrott
closed
4 years ago
0
Not for merge: Adds work in progress analysis of CDA data sources.
#363
bwalsh
closed
11 months ago
0
Add missing GTEx project <--> case edges
#362
adamstruck
closed
4 years ago
0
Fix G2P -> Publication links from DGIGB
#361
adamstruck
closed
4 years ago
0
Compound SB525334 or SB-525334?
#360
kellrott
closed
1 year ago
3
scripts: updated check-graph to add parallelization
#359
adamstruck
closed
4 years ago
0
Adds GDSC variant calls and updates allele normalization strategy
#358
adamstruck
closed
4 years ago
2
GDSC copy number data
#357
adamstruck
opened
5 years ago
0
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