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bodkan
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slendr
Population genetic simulations in R 🌍
https://bodkan.net/slendr
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Add SLiM's selfing rate function to slendR?
#109
ornobalam
closed
7 months ago
3
Allow different mutation rate at different location on the demography ?
#108
Jilong-Jerome
closed
7 months ago
2
Fix passing of node times from tskit through `ts_phylo`
#107
bodkan
closed
2 years ago
1
Write the initial population size of a daughter population in a summary
#106
bodkan
closed
2 years ago
0
Implement ancestry tract detection mechanism
#105
bodkan
closed
7 months ago
1
Port slendr to SLiM 4.0 and update Python dependencies
#104
bodkan
closed
2 years ago
3
Is geneflow restricted to overlapping region for populations with incomplete overlap?
#103
jahink17
closed
2 years ago
4
Windows port of the msprime functionality
#102
bodkan
closed
2 years ago
4
Not getting an output when running slim
#101
AhmedSelim1997
closed
2 years ago
7
Changing the way tree-sequence outputs are handled by default
#100
bodkan
closed
2 years ago
4
Admixture in slendr vs msprime
#99
archgen
closed
2 years ago
2
Make sure slendr's SLiM back end can run both under SLiM 3 and SLiM 4
#98
bodkan
closed
2 years ago
3
Add option to skip serialization of slendr configuration files
#97
bodkan
closed
2 years ago
2
Could you allow non-uniform recombination rate in slendr?
#96
dangliu
opened
2 years ago
10
Do you support a function to run simulation paralelly in cluster or using multiple cpus?
#95
dangliu
closed
2 years ago
2
why do the number of simulated individuals differ between the same model run by SLiM and msprime?
#94
dangliu
closed
2 years ago
1
Installation issue "error: ModuleNotFoundError: No module named 'tskit'"
#93
awohns
closed
2 years ago
11
A few assorted usage issues: installation, visualization, distance units
#92
ornobalam
closed
7 months ago
10
Generalize the R-tskit interface towards non-slendr tree sequences
#91
bodkan
closed
2 years ago
14
Can we handle "failed to generate child after 1 million attempts" a bit more gracefully?
#90
bodkan
opened
2 years ago
2
How to interpret location coordinates
#89
percyfal
closed
2 years ago
6
Add an option to automatically run simulation replicates (including parallel runs)
#88
bodkan
closed
1 year ago
3
slim call throws conversion error
#87
percyfal
closed
2 years ago
5
trouble with ts_load(): Error in times * model$generation_time : non-numeric argument to binary operator
#86
ornobalam
closed
2 years ago
15
Generalize the R-tskit interface towards non-slendr tree sequences
#85
bodkan
closed
1 year ago
4
Installing requirements when using virtualenv
#84
DominikRafacz
closed
2 years ago
9
Failure with Python env install
#83
thijsjanzen
closed
2 years ago
22
Something very odd happened while running slendr
#82
jaurbanChicago
closed
2 years ago
14
Question about Sampling Process
#81
jaurbanChicago
closed
2 years ago
13
Make the msprime backend first-class citizen in slendr
#80
bodkan
closed
2 years ago
1
Save metadata to tree sequences produced by the msprime backend
#79
bodkan
closed
2 years ago
8
Satisfy CRAN & Win-builder & R-hub check on macOS/Windows/Linux
#78
bodkan
closed
2 years ago
1
Slim Simulations using SliM Genomic element types
#77
jaurbanChicago
closed
2 years ago
1
Full implementation of the msprime back end for slendr models
#76
bodkan
closed
2 years ago
5
The slim binary was not found in your $PATH variable.
#75
jaurbanChicago
closed
2 years ago
4
Fix some minor issues (broken links etc.) described in a user report
#74
bodkan
closed
2 years ago
2
Custom dispersal functions
#73
bodkan
closed
2 years ago
7
deal with population overlap
#72
petrelharp
opened
2 years ago
5
Spatial sampling
#71
bodkan
closed
2 years ago
0
Fix two reported sampling issues
#70
bodkan
closed
2 years ago
0
Remembered individuals missing despite being scheduled for sampling
#69
bodkan
closed
2 years ago
12
Broken check for landscape intersection when population fills the whole world?
#68
bodkan
closed
2 years ago
1
Figure out a more convenient way to coalesce lineages in `ts_recapitate`
#67
bodkan
closed
7 months ago
6
Refactoring of the SLiM backend and some R internals
#66
bodkan
closed
3 years ago
9
A support for (partial) import of Demes models
#65
bodkan
closed
2 years ago
2
Can we handle individual locations in SLiM directly in projected CRS units?
#64
bodkan
opened
3 years ago
5
Switch to new msprime.sim_mutations in ts_mutate
#63
bodkan
closed
3 years ago
2
add slendr version number to top-level metadata
#62
petrelharp
closed
3 years ago
0
save raster information in top-level tree sequence metadata
#61
petrelharp
closed
3 years ago
0
Implement spatial tree sequence handling
#60
bodkan
closed
3 years ago
0
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