This repository contains tools for cross-compiling a Python interpreter and the Numpy and Scipy libraries for an Intel Xeon Phi Many Integrated Core (MIC) coprocessor, allowing you to run Python code using those libraries as parallel native executables on the coprocessor, communicating and processing with the full power and expressivity of Python.
Based on Emilio Castillo Villar's work to cross-compile Python.
Numpy was never designed to be cross-compiled for anything, much less a system without a compiler of its own, so much effort was placed into re-engineering it to use the "MIC" architecture and the relevant Intel MKL libraries. Internal testing code for Numpy and Scipy also works.
After downloading the Makefile into a folder and running make
like the following:
mkdir -p mic
cd mic
wget https://raw.github.com/bpartridge/PyPhi/master/Makefile -N && make
that folder mic
will then contain python/_install
, which will be the
$PYTHONHOME
whose bin/python
can be executed on the Phi, and whose
lib/python2.7[/site-packages]
should be on $PYTHONPATH
.
See mic_task.sh
for a usage example.
Tested on the Babbage cluster at NERSC as part of the MANTISSA project.
64-bit Intel system for compiling.
Recent Python installed on that system; tested with the Anaconda distribution.
Intel Composer XE 2013 SP1 installed with MKL and MPI support in
/opt/intel/composer_xe_2013_sp1/
.
A Xeon Phi coprocessor for testing (not needed for compilation itself.)
Currently, SSE instructions are disabled for Numpy, since they are
very different on the Phi. This would require a native porting effort
for such files as einsum.c.src
.
MPI such as mpi4py.
Pip/setuptools for non-native python packages.
A generic modified version of Pip for native python packages.
http://randomsplat.com/id5-cross-compiling-python-for-embedded-linux.html
http://www.nersc.gov/users/computational-systems/testbeds/babbage/#toc-anchor-12
http://www.scipy.org/scipylib/building/linux.html#any-distribution-with-intel-c-compiler-and-mkl
http://thread.gmane.org/gmane.comp.python.scientific.user/32036/focus=32037
http://whatschrisdoing.com/blog/2009/10/16/cross-compiling-python-extensions/
Copyright (c) 2014 Brenton Partridge
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