brain-microstructure-exploration-tools abcd-noddi-tbss-experiments issues

brain-microstructure-exploration-tools / abcd-noddi-tbss-experiments

experiments with neuroimaging pipelines that use noddi and tbss

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Establish longitudinal analysis methodology

#26 ebrahimebrahim opened 3 months ago
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add tractseg step

#25 ebrahimebrahim closed 4 months ago
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add tractseg step

#24 ebrahimebrahim closed 4 months ago
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Parallel denoising

#23 ebrahimebrahim closed 4 months ago
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add denoising to the pipeline

#22 ebrahimebrahim closed 4 months ago
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Add population template step

#21 ebrahimebrahim opened 5 months ago
1
add AMICO noddi fitting step

#20 ebrahimebrahim opened 5 months ago
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add degree power normalization step to pipeline

#19 ebrahimebrahim closed 5 months ago
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add degree power normalization step to pipeline

#18 ebrahimebrahim closed 5 months ago
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Add denoising to pipeline

#17 ebrahimebrahim closed 4 months ago
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Consider using evacs+ instead of hd-bet for brain extraction

#16 ebrahimebrahim closed 6 months ago
2
Add TBSS step to the pipeline

#15 ebrahimebrahim opened 6 months ago
1
Improve NODDI step in the pipeline

#14 ebrahimebrahim opened 6 months ago
1
analyze degree power variance by scanner/site

#13 ebrahimebrahim closed 6 months ago
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phillips scans need to be concatenated

#12 ebrahimebrahim closed 7 months ago
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group response functions by study site

#11 ebrahimebrahim closed 7 months ago
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requirements files are not minimal

#10 ebrahimebrahim opened 7 months ago
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Add band energy computation

#9 ebrahimebrahim closed 7 months ago
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switch to Tax response estimation in mrtrix side

#8 ebrahimebrahim closed 7 months ago
1
handle x-flip in b-vectors

#7 ebrahimebrahim closed 7 months ago
1
include whole-brain channels for registration

#6 ebrahimebrahim closed 7 months ago
1
Msmt csd

#5 ebrahimebrahim closed 7 months ago
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allow grouping of response aggregation

#4 ebrahimebrahim closed 7 months ago
3
add band energy computation step

#3 ebrahimebrahim closed 7 months ago
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adopt msmt csd

#2 ebrahimebrahim closed 7 months ago
1
dipy and mrtrix3 results not agreeing

#1 ebrahimebrahim closed 11 months ago
2