brainglobe brainreg issues

brainglobe / brainreg

Automated 3D brain registration with support for multiple species and atlases.

https://brainglobe.info/documentation/brainreg/index.html

BSD 3-Clause "New" or "Revised" License

121 stars 27 forks source link

issues

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Schedule tests to run weekly

#218 IgorTatarnikov closed 2 weeks ago
0
Fix caching in CI

#217 IgorTatarnikov closed 1 month ago
0
[pre-commit.ci] pre-commit autoupdate

#216 pre-commit-ci[bot] closed 1 month ago
2
Does Brainreg not work with images with are >2048 pixels in xy?

#214 Eddymorphling closed 1 month ago
1
Mark failing napari tests as xfail

#213 IgorTatarnikov closed 1 month ago
0
[pre-commit.ci] pre-commit autoupdate

#212 pre-commit-ci[bot] closed 1 month ago
0
Tests are failing with napari 0.5.0

#211 adamltyson opened 2 months ago
1
Standardise contact information in readme

#210 adamltyson closed 2 months ago
1
[pre-commit.ci] pre-commit autoupdate

#209 pre-commit-ci[bot] closed 3 months ago
0
Enforce latest version of scikit-image

#208 adamltyson closed 3 months ago
0
Fix hemisphere bug in `check_orientation`

#207 alessandrofelder closed 3 months ago
0
[BUG] conda-forge installation doesn't come with brainglobe_atlasapi

#206 alessandrofelder closed 3 months ago
12
[BUG] Installation via metapackage doesn't come with appropriate libpng on Silicon Mac

#205 alessandrofelder opened 3 months ago
5
Update supported Python versions

#204 adamltyson closed 4 months ago
0
[pre-commit.ci] pre-commit autoupdate

#203 pre-commit-ci[bot] closed 4 months ago
0
Registration fails in napari plugin if data is loaded with dask.

#202 adamltyson closed 3 months ago
5
Update caching

#201 adamltyson closed 4 months ago
1
[BUG] "Check orientation" button in napari not consistent with registration results for hemisphere

#200 pderdeyn closed 3 months ago
10
Update use of brainglobe_utils image IO submodule

#199 adamltyson closed 4 months ago
0
Add descriptive parameter names

#198 adamltyson closed 5 months ago
1
[pre-commit.ci] pre-commit autoupdate

#197 pre-commit-ci[bot] closed 5 months ago
0
make non-conda mac tests use intel chips

#196 alessandrofelder closed 5 months ago
0
Allow number of free CPU cores to be set in the GUI

#195 adamltyson closed 5 months ago
0
Use descriptive parameter names rather than variable names in the napari plugin

#194 adamltyson closed 5 months ago
0
Harmonise napari plugin and CLI entry points

#193 adamltyson closed 5 months ago
4
[BUG] The GUI does not allow negative values in key parameter boxes

#192 AdrianAriasAbreu closed 5 months ago
1
CI on both types of Macs

#191 alessandrofelder closed 5 months ago
2
Convert to qtpy

#190 adamltyson opened 5 months ago
0
Add codecov token

#189 K-Meech closed 5 months ago
0
Import header from brainglobe-utils

#188 K-Meech closed 5 months ago
1
[pre-commit.ci] pre-commit autoupdate

#187 pre-commit-ci[bot] closed 6 months ago
0
Refactor to use ImageIOLoadException from brainglobe_utils

#186 K-Meech closed 6 months ago
1
allow for additional channels with same name

#185 alessandrofelder closed 6 months ago
0
[BUG] brainreg-napari rescale fails when stack opened using "Open files as stack"

#184 alessandrofelder opened 7 months ago
1
[BUG] Doublecheck additional channels don't overwrite each other

#183 alessandrofelder closed 6 months ago
3
bg-atlasapi -> brainglobe-atlasapi

#182 willGraham01 closed 7 months ago
0
Update `imio` dependency

#181 willGraham01 closed 7 months ago
0
[FEATURE] Refactor `LoadFileException` into `brainglobe-utils`

#180 willGraham01 closed 6 months ago
3
[pre-commit.ci] pre-commit autoupdate

#179 pre-commit-ci[bot] closed 8 months ago
0
Update test_and_deploy.yml

#178 alessandrofelder closed 8 months ago
0
Update CITATION.cff

#177 willGraham01 closed 7 months ago
0
Bump to brainglobe-space dependency

#176 willGraham01 closed 8 months ago
0
Update GH actions badge

#175 adamltyson closed 8 months ago
0
Update metadata for napari hub

#174 adamltyson closed 8 months ago
0
Update pyproject.toml

#173 willGraham01 closed 9 months ago
0
Update brainglobe-napari-io import

#172 adamltyson closed 9 months ago
4
[BUG] cannot install the lastest version from napari GUI

#171 jingjie-li closed 8 months ago
7
Fix tests

#170 adamltyson closed 9 months ago
0
[pre-commit.ci] pre-commit autoupdate

#169 pre-commit-ci[bot] closed 9 months ago
0
Add napari trove classifier to package

#168 willGraham01 closed 9 months ago
0