Modify MCMC software to write MCON - Githubissues

bredelings / MCON

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Modify MCMC software to write MCON #2

Open bredelings opened 1 year ago

bredelings commented 1 year ago

Currently, MCON can be written by:

bali-phy 4.0 beta
revbayes, with PR https://github.com/revbayes/revbayes/pull/377

To add:

BayesCode https://github.com/bayesiancook/bayescode
PhyloBayes https://github.com/bayesiancook/pbmpi
BEAST - https://github.com/beast-dev/beast-mcmc/
BEAST2 - https://github.com/CompEvol/beast2
JAGS - https://sourceforge.net/p/mcmc-jags/code-0/ci/default/tree/
STAN - https://github.com/stan-dev
NIMBLE - https://r-nimble.org/writing-reversible-jump-mcmc-in-nimble

bredelings commented 1 year ago

It looks like STAN writes CSV.

Here's a proposal for JSON output: https://github.com/stan-dev/design-docs/blob/ebd39a0a43d1abc5ab1cda700f2f290e31efb27c/designs/0007-json_writer.md

https://discourse.mc-stan.org/t/wish-list-for-stan-interfaces/932

https://discourse.mc-stan.org/t/request-for-comments-json-sampling-output/12513