Modify MCMC diagnostic software to read MCON - Githubissues

bredelings / MCON

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Modify MCMC diagnostic software to read MCON #3

Open bredelings opened 10 months ago

bredelings commented 10 months ago

Packages to modify:

RevBayes - https://github.com/revbayes/revbayes
Tracer - https://github.com/beast-dev/tracer
- TracerFrame, Skyline, Extended Skyline, Skyride, LTT, TTT,
R packages
- coda - https://github.com/cran/coda
- posterior
- mcmcse
bayesplot - https://github.com/stan-dev/bayesplot

bredelings commented 10 months ago

TracerFrame: calls loadTraces() from beast-mcmc/src/dr/inference/trace/LogFileTraces.java

Java doesn't seem to have union types.

https://stleary.github.io/JSON-java/org/json/JSONObject.html