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brennanpincardiff / drawProteins

Creating package to draw proteins from Uniprot API
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Annotation Glycosylation #29

Open jmmelod opened 3 years ago

jmmelod commented 3 years ago

Hello, I found this tool very useful for protein visualization. Will it be possible to include in the graphs information about glycosylation sites based on the information on the Uniprot website?, I am quite new to R, it is very likely someone had already asked this, apologies

brennanpincardiff commented 3 years ago

Thanks and sorry for the slow response. Yes, it is possible to add information about glycosylation sites. You could use a variation of the code to show phosphorylations. Maybe have a look at some of the examples on my blog: https://rforbiochemists.blogspot.com/search?q=drawProteins What symbol would you like to use and do you have an example protein that you would like to try? I might have time to write some examples for you. Best wishes, Paul

jmmelod commented 3 years ago

Thanks Paul for your answer, I was looking a two proteins P02853 (PHSB_PHAVU, P80463 (PHS1_PHALU, I was thinking to use a blue square to represent the GlcNacs , the only thing I did not know was how to extract the information about t the glycosylation from the database the other information is retrieved. I just wanted to show the sites in the structural domains .

I will see the examples a little bit more

thanks a lot

On Fri, 28 May 2021, 08:34 Paul Brennan, @.***> wrote:

Thanks and sorry for the slow response. Yes, it is possible to add information about glycosylation sites. You could use a variation of the code to show phosphorylations. Maybe have a look at some of the examples on my blog: https://rforbiochemists.blogspot.com/search?q=drawProteins What symbol would you like to use and do you have an example protein that you would like to try? I might have time to write some examples for you. Best wishes, Paul

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